Raymond A A - OmicsDI

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Unknown (3023)
Transcriptomics (204)
Proteomics (70)
Genomics (43)
Genomic (8)
Metabolomics (1)

Organisms

Homo sapiens (145)
Mus musculus (73)
Rattus norvegicus (10)
Candida albicans (9)
Saccharomyces cerevisiae (8)
Bos taurus (8)
Leishmania infantum (5)
Leishmania major (4)
Leishmania donovani (3)
Aspergillus niger (3)
Metarhizium anisopliae (2)
Geobacter sulfurreducens (2)
Solanum tuberosum (2)
Sus scrofa (2)
Macaca fascicularis (2)
Heliothis virescens (1)
Vitis aestivalis (1)
Rhodopseudomonas palustris (1)
Rosa hybrid cultivar (1)
delta proteobacterium NaphS2 (1)
Leishmania tarentolae (1)
Citrus reticulata (1)
Candida albicans SC5314 (1)
Chlorocebus aethiops (1)
Yarrowia lipolytica (1)
Fragilariopsis cylindrus (1)
Neisseria meningitidis (1)
Mycobacterium tuberculosis (1)
Streptococcus pneumoniae (1)
Escherichia coli (1)

Organisms

Homo sapiens (4)
Dendroctonus ponderosae (2)
Mus musculus (2)
Sanguina aurantia (1)
Candida albicans (1)
Danio rerio (1)

Repository

biostudies-arrayexpress (215)
pride (53)
EGA (17)
ENA (12)
MassIVE (11)
dbGaP (8)
geo (3)
PeptideAtlas (3)
iProX (2)
MetaboLights (1)
PanoramaPublic (1)

Tissue

Liver (11)
Cell culture (7)
Brain (4)
Epithelial cell of prostate (3)
Fibroblast (3)
Brain (2)
Embryonic stem cell (2)
Epithelial cell (2)
Blood plasma (1)
Bone (1)
Cerebellar neuron (1)
Cervix epithelium (1)
Early embryonic cell (1)
Esophagus (1)
Esophagus mucosa (1)
HeLa cell (1)
Hepatocyte (1)
Kidney (1)
Macrophage (1)
Pancreas (1)
Primary cell (1)
Prostate gland (1)
Small intestine (1)
Spleen (1)
Testis (1)
Urine (1)
Whole body (1)

Disease

Hepatocellular adenoma (7)
Prostate cancer (3)
Neuroblastoma (2)
Melanoma (2)
Alpha 1-antitrypsin deficiency (2)
Glioma (1)
Ganglioneuroblastoma (1)
Temporal lobe epilepsy (1)
Brain glioblastoma multiforme (1)
Breast cancer (1)
Endometrial cancer (1)
Esophageal cancer (1)
Esophagus adenocarcinoma (1)
Glioblastoma (1)
Hepatocellular carcinoma (1)
Human immunodeficiency virus infectious disease (1)
Pancreatic ductal adenocarcinoma (1)
Schizophrenia (1)

Technology Type

Mass Spectrometry (53)
Shotgun proteomics (33)
Bottom-up proteomics (13)
Data-dependent acquisition (12)
Affinity purification coupled with mass spectrometry proteomics (3)
SWATH MS (3)
MSE (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Mass spectrometry (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Q Exactive (4)
LTQ Orbitrap Velos (4)
NextSeq 2000 (2)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (2)
Orbitrap Fusion Lumos (2)
NEXTflex Small-RNA Seq kit v3 (Perkin Elmer) & NEXTflex Rapid XP DNA-seq kit v2 (Perkin Elmer) (1)
Direct-zol RNA microprep kit (Zymo Research), LabChip RNA pico sensitivity assay, Perkin Elmer & Nucleospin RNA kit (Macherey Nagel) (1)
PALM type 4 microscope (Zeiss) (1)
Scanning of was performed on an Axon 4000B scanner (1)
ScanArray 5000 [PerkinElmer] (1)
ScanArray Express HT (1)
LTQ Orbitrap Elite (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
LTQ Orbitrap XL (1)

Publication Date

2010 (34)
2013 (30)
2014 (28)
2012 (26)
2015 (25)
2011 (21)
2008 (18)
2016 (14)
2026 (12)
2022 (11)
2021 (11)
2023 (10)
2025 (9)
2019 (7)
2006 (7)
2009 (6)
2007 (6)
2024 (5)
2018 (3)
2020 (2)
2005 (1)
2004 (1)
2017 (1)

UNIPROT ID/AC

A0A024RAN2 (2)
A0A024RC46 (2)
A0A087WTX5 (2)
A0A087WVW2 (2)
A0A087WWK8 (2)
A0A087WYL9 (2)
A0A087X130 (2)
A0A087X1V9 (2)
A0A0A0MS07 (2)
A0A0A0MS51 (2)
A0A0A0MSA7 (2)
A0A0C4DGT3 (2)
A0AVT1 (2)
A0M8Q6 (2)
A0MZ66 (2)
A0N5G5 (2)
A1L0T0 (2)
A2BFH1 (2)
A2NI60 (2)
A2NUT2 (2)
A2RU30 (2)
A4F255 (2)
A5A3E0 (2)
A5PKW4 (2)
A6NEL2 (2)
A6NGB9 (2)
A6NHL2 (2)
A6NNZ2 (2)
A7KAX9 (2)
A7XYQ1 (2)

ENSEMBL ID

ENSG00000170477 (2)

CHEBI ID

CHEBI:10072 (1)
CHEBI:105799 (1)
CHEBI:111517 (1)
CHEBI:11805 (1)
CHEBI:12962 (1)
CHEBI:131434 (1)
CHEBI:132477 (1)
CHEBI:132479 (1)
CHEBI:132948 (1)
CHEBI:132983 (1)
CHEBI:133028 (1)
CHEBI:133032 (1)
CHEBI:133057 (1)
CHEBI:133065 (1)
CHEBI:133073 (1)
CHEBI:133077 (1)
CHEBI:133096 (1)
CHEBI:133136 (1)
CHEBI:133139 (1)
CHEBI:133141 (1)
CHEBI:133144 (1)
CHEBI:133172 (1)
CHEBI:133181 (1)
CHEBI:133183 (1)
CHEBI:133186 (1)
CHEBI:133217 (1)
CHEBI:133223 (1)
CHEBI:133225 (1)
CHEBI:133456 (1)
CHEBI:133463 (1)

Metabolite Name

(R)-3-hydroxybutyrylcarnitine (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-arachidonoyl-GPA (20:4) (1)
1-arachidonoyl-GPI (20:4) (1)
1-lignoceroyl-GPC (24:0) (1)
1-linolenoyl-GPC (18:3) (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6) (1)
1-linoleoyl-GPA (18:2) (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPI (18:2) (1)
1-methyl-4-imidazoleacetate (1)
1-methyladenine (1)
1-methylguanidine (1)
1-methylhistidine (1)
1-methylhypoxanthine (1)
1-methylnicotinamide (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-oleoyl-2-docosahexaenoyl-GPC (18:1/22:6) (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2) (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4) (1)
1-palmitoyl-2-arachidonoyl-GPI (16:0/20:4) (1)
1-palmitoyl-2-docosahexaenoyl-GPC (16:0/22:6) (1)
1-palmitoyl-2-docosahexaenoyl-GPE (16:0/22:6) (1)

First Public Date

2013 (3)
2026 (2)
2021 (2)
2014 (2)
2024 (1)
2022 (1)
2016 (1)

Classification

fungi (1)

Study type

Transcription profiling by array (135)
RNA-seq of coding RNA (23)
ChIP-seq (11)
Comparative genomic hybridization by array (10)
ChIP-chip by tiling array (7)
Transcription profiling by SAGE (5)
Unknown experiment type (4)
Methylation profiling by array (4)
ChIP-chip by array (3)
Genotyping by array (3)
Other (3)
RNA-seq of coding RNA from single cells (2)
Animal - One-color microarray (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2023 (288)
2021 (282)
2022 (266)
2020 (259)
2024 (241)
2025 (239)
2019 (211)
2018 (210)
2017 (168)
2015 (157)
2014 (138)
2016 (137)
2013 (100)
2010 (98)
2012 (84)
2011 (79)
2009 (63)
2008 (55)
2026 (45)
2007 (37)
2006 (32)
2005 (14)
2004 (8)
2002 (7)
2001 (6)
2003 (4)
2000 (4)
1999 (3)
1996 (1)

Lab affiliation

Plateforme Oncoprot, TBM-Core US 005, F-33000 Bordeaux, France (6)
Laboratoire Maladies Rares: Génétique et Métabolisme- INSERM U1211, 33000 Bordeaux, France (3)
Director Stony Brook Cancer Center (2)
Raymond H. Wittcoff Distinguished Professor and Head Department of Biochemistry and Molecular Biophysics Washington University School of Medicine St. Louis, MO 63110 (2)
University of Bordeaux, Inserm, UMR1312, BRIC, BoRdeaux Institute of onCology, 146 Rue Léo Saignat, Bordeaux, F-33076, France. (2)
BaRITOn, Bordeaux Research in Translational Oncology, Team 1, 146 Rue Léo Saignat, Bordeaux, F-33076, France. (1)
Bariton INSERM 1053, Bordeaux, France (1)
Biologics and Genetic Therapies Directorate, Health Canada (1)
Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom (1)
BoRdeaux Institute of onCology (BRIC) UMR1312 Inserm / Université de Bordeaux Team 3 Liver cancers and invasion 146 rue Léo Saignat 33076 Bordeaux, France (1)
Broad Institute, Dana Farber Cancer Institute (1)
California Institute of Technology (1)
Cancer Biology and Genetics, MSKCC (1)
College of Veterinary Medicine, Henan Agricultural University (1)
Department of Biochemistry and Pharmacology, University of Melbourne, Parkville, VIC 3010, Australia (1)
Department of Biomedicine, Bramham Lab, University of Bergen, Norway (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States (1)
Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada, M5S 1A8 (1)
Departments of Pediatrics and Systems Pharmacology and Translational Therapeutics, the Raymond and Ruth Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. (1)
Dept. of Cellular & Molecular Physiology Institute of Translational Medicine University of Liverpool Crown Street Liverpool L69 3BX (1)
Head of the Curie Institute Mass Spectrometry Platform (1)
INSERM U1029, University Bordeaux, Pessac, France (1)
INSERM, UMR1053, BaRITOn Bordeaux Research in Translational Oncology, F-33000 Bordeaux, France (1)
Inserm BioTis, Laboratory for the Bioengineering of Tissues, University of Bordeaux, Bordeaux, France Department of Oral Surgery, University Hospital of Bordeaux, Bordeaux, France (1)
Institut de recherche en santé, environnement et travail (IRSET). 9 Av. du Professeur Léon Bernard, 35000 Rennes (1)
Institute of Translational Medicine University of Liverpool Crown Street Liverpool L69 3BX (1)
Laboratoire de Génétique Ophtalmologique, INSERM U1163, Institut Imagine, Paris, France (1)
Oncoprot Platform, TBM-Core US 005, F-33000 Bordeau, France. univ. Bordeaux, Inserm UMR1312 BoRdeaux Institute of onCology (BRIC), F-33000 Bordeaux, France (1)
Raymond H. Wittcoff Distinguished Professor and Head Department of Biochemistry and Molecular Biophysics Washington University School of Medicine St. Louis, MO 63110 United States of America (1)
RyTME, Bordeaux Institute of Oncology (BRIC)-UMR1312 Inserm, B2 Ouest, Allée Geoffroy St Hilaire CS50023, 33615, Pessac, France. (1)

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Multi-omics phenotyping of the gut-liver axis reveals metabolic perturbations from a low-dose pesticide mixture in rats

Health effects of pesticides are not always accurately detected using the current battery of regulatory toxicity tests. We compared standard histopathology and serum biochemistry measures and multi-omics analyses in a subchronic toxicity test of a mixture of six pesticides frequently detected in foo...

2020-11-19 | MTBLS138 | MetaboLights

Suspension Processing of Microporous Metal-Organic Frameworks: A Scalable Route to High-Quality Adsorbents.

Not available

S-EPMC6123854 | biostudies-literature

SARS-CoV-2 protein encoded by ORF8 contains a histone mimic, disrupts chromatin regulation, and enhances replication

SARS-CoV-2 emerged in China at the end of 2019 and caused the global pandemic of COVID-19, a disease with high morbidity and mortality. While our understanding of this new virus is rapidly increasing, gaps remain in our understanding of how SARS-CoV-2 can effectively suppress host cell antiviral res...

ORGANISM(S): Homo sapiens (Human)

2022-07-22 | PXD034379 | Pride