Rcf - OmicsDI

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Proteomics (421)
Transcriptomics (194)
Unknown (189)
Metabolomics (140)
Genomics (52)

Organisms

Homo sapiens (86)
Mus musculus (51)
Drosophila melanogaster (12)
Saccharomyces cerevisiae (9)
Apis mellifera (6)
Schizosaccharomyces pombe (4)
Rhizobium leguminosarum (3)
Saccharina latissima (3)
Mycobacterium tuberculosis (3)
Rattus norvegicus (3)
Danio rerio (3)
Pimephales promelas (2)
Macaca fascicularis (2)
Streptococcus pneumoniae (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Heterocephalus glaber (2)
Sinorhizobium meliloti (2)
Salmonella enterica subsp. enterica (1)
Ambystoma mexicanum (1)
Daphnia pulex (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)
Mus musculus domesticus (1)
Bacillus subtilis (1)
Anopheles gambiae (1)
Saccharomyces cerevisiae S288C (1)
Aedes aegypti (1)
Apis mellifera mellifera (1)
Gallus gallus (1)
Corynebacterium glutamicum ATCC 13032 (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Organisms

Mus musculus (17)
Homo sapiens (8)
Dermacentor andersoni (1)
Ixodes scapularis (1)
Pyrus communis (1)
Saccharomyces cerevisiae (1)

Repository

pride (414)
biostudies-arrayexpress (205)
MetaboLights (140)
ENA (35)
geo (8)
MassIVE (7)
NODE (3)

Tissue

Cell culture (90)
Brain (25)
Epithelial cell (16)
Blood plasma (13)
Liver (13)
Permanent cell line cell (13)
Cell suspension culture (12)
Blood (11)
Blood serum (9)
Plant cell (9)
Heart (8)
Blood cell (7)
Embryo (7)
Skin (7)
Urine (7)
Embryonic stem cell (6)
Fibroblast (6)
Oocyte (6)
Lung (5)
Colon (5)
Egg (5)
Hepatocyte (5)
Macrophage (5)
B cell (4)
Endosperm (4)
Leaf (4)
Photosynthetic cell (4)
Prostate (2)
Breast (1)
Prostate-lung (1)

Disease

Disease free (16)
Breast cancer (12)
Acute leukemia (5)
Colon cancer (5)
COVID-19 (3)
Cardiovascular system disease (3)
Glioblastoma (2)
Normal (2)
Alzheimer's disease (2)
Brain cancer (2)
Colorectal cancer (2)
Diffuse midline glioma (2)
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Melanoma (2)
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Skin cancer (2)
Skin melanoma (2)
Erythroleukemia (1)
Chronic infection with geohelminth ascaris lumbricoides (1)
Rheumatoid arthritis (1)
Hyperglycaemic (1)
Acute infection with Ascaris lumbricoides (1)
Infant SGA (1)
Non-diabetic (1)
Chronic myeloid leukemia (1)
Acute Myeloid Leukemia (1)
Neurological disease (1)
Prostate cancer (1)
Wilms tumour (1)
HIV state: positive, infected with non-typhoidal salmonellosis (1)

Technology Type

Mass Spectrometry (414)
Shotgun proteomics (207)
Mass spectrometry (96)
Bottom-up proteomics (94)
Data-dependent acquisition (59)
Affinity purification coupled with mass spectrometry proteomics (49)
Mass spectrometry assay (42)
Data-independent acquisition (28)
Gel-based experiment (20)
SWATH MS (18)
Top-down proteomics (11)
Chemical cross-linking coupled with mass spectrometry proteomics (10)
All-ion fragmentation (4)
NMR spectroscopy (3)
DiaPASEF (3)
Immunopeptidomics (3)
Affinity proteomics (2)
Glycoproteomics (2)
HDMSE (2)
SRM/MRM (2)
Metaproteomics (1)
RNA mass spectrometry (1)

Instrument Platform

Liquid Chromatography MS - positive - hilic (39)
Liquid Chromatography MS - negative - hilic (38)
Liquid Chromatography MS - positive - reverse phase (29)
Illumina NovaSeq 6000 (19)
Liquid Chromatography MS - negative - reverse phase (19)
NextSeq 500 (12)
Illumina HiSeq 2500 (8)
GenePix 4000A [Axon Instruments] (7)
Illumina HiSeq 4000 (6)
NextSeq 550 (5)
Illumina Genome Analyzer II (4)
Illumina MiSeq (3)
Illumina HiSeq 2000 (3)
Illumina HiSeq 3000 (3)
LTQ (3)
10x Chromium (2)
ScanArray [PerkinElmer] (2)
Illumina NovaSeq X (2)
Agilent SureScan Microarray Scanner G2600D (1)
Axon- GenePix4000B (1)
Illumina NovaSeq X Plus (1)
NextSeq 1000 (1)
N/A (1)
DNBSEQ-G400 (1)
HiSeq X Ten (1)
Illumina HiSeq 1500 (1)
Orbitrap Eclipse (1)
Orbitrap Fusion Lumos (1)
Q Exactive Hybrid Quadrupole-Orbitrap Mass Spectrometer (1)
QExactive (1)

Publication Date

2026 (120)
2025 (109)
2024 (97)
2021 (68)
2022 (64)
2023 (50)
2020 (38)
2019 (30)
2017 (26)
2010 (22)
2014 (19)
2018 (17)
2016 (17)
2015 (17)
2012 (16)
2011 (16)
2009 (13)
2013 (12)
2008 (12)
2007 (3)
2006 (3)
2004 (2)
2005 (1)
2027 (1)

CHEBI ID

CHEBI:30769 (21)
CHEBI:16335 (20)
CHEBI:15428 (18)
CHEBI:32816 (16)
CHEBI:17596 (16)
CHEBI:18237 (15)
CHEBI:16708 (15)
CHEBI:15741 (15)
CHEBI:17509 (15)
CHEBI:27897 (15)
CHEBI:15756 (15)
CHEBI:16865 (14)
CHEBI:17568 (14)
CHEBI:16704 (14)
CHEBI:16027 (14)
CHEBI:26078 (14)
CHEBI:17368 (14)
CHEBI:28875 (13)
CHEBI:15940 (13)
CHEBI:16467 (13)
CHEBI:15891 (13)
CHEBI:15971 (13)
CHEBI:17895 (13)
CHEBI:17295 (13)
CHEBI:28300 (12)
CHEBI:28842 (12)
CHEBI:6650 (12)
CHEBI:28044 (12)
CHEBI:16196 (12)
CHEBI:16235 (12)

Metabolite Name

Hypoxanthine (30)
Adenosine (29)
Creatinine (28)
Adenine (25)
Uracil (24)
Betaine (24)
Xanthine (24)
Uridine (23)
Creatine (23)
Glycine (22)
Choline (22)
Guanine (22)
Deoxycholic acid (20)
Trigonelline (19)
Citrulline (19)
Ornithine (19)
Taurine (19)
Glycocholic acid (19)
Serine (19)
Phenylalanine (19)
Glutamine (19)
Cytidine (19)
Inosine (19)
Pentadecanoic acid (18)
5-Aminopentanoic acid (18)
Benzoic acid (18)
Tauroursodeoxycholic acid (18)
Citric acid (18)
Lysine (18)
Histamine (18)

First Public Date

2026 (8)
2025 (6)
2021 (4)
2022 (3)
2020 (3)
2019 (3)
2014 (3)
2024 (2)
2023 (2)
2013 (1)

Modification

2x(15)N labeled L-lysine (1)
4'-dihydroxyphenylalanine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)
N6 (1)

Study type

Transcription profiling by array (93)
RNA-seq of coding RNA (24)
RNA-seq of coding RNA from single cells (18)
ChIP-seq (15)
ATAC-seq (6)
Methylation profiling by array (6)
Comparative genomic hybridization by array (5)
RNA-seq of total RNA (4)
ChIP-chip by array (3)
Other (3)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
Animal - High-throughput sequencing (2)
Single nucleus RNA sequencing (2)
MicroRNA profiling by array (2)
Cell line - Single-cell sequencing (1)
RNA-seq of non coding RNA from single cells (1)
Two-color microarray (1)
Animal - One-color microarray (1)
Animal - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
4C (1)
ScATAC-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (40)
2022 (35)
2021 (34)
2024 (31)
2023 (31)
2010 (23)
2014 (21)
2026 (19)
2020 (19)
2012 (17)
2011 (17)
2013 (15)
2018 (14)
2016 (14)
2019 (13)
2009 (13)
2008 (13)
2017 (9)
2015 (9)
2007 (3)
2006 (2)
2005 (1)
2004 (1)

Lab affiliation

Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (6)
Bioplatforms Australia (5)
IMSB, ETH Zurich (4)
University of Washington (4)
Crick-GSK LinkLabs, UK (3)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (3)
Maria Sklodowska-Curie National Research Institute of Oncology, Gliwice Branch (3)
Memorial Sloan Kettering Cancer Center (3)
University of Wisconsin-Madison (3)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising GERMANY (2)
Department of Bioactive and Functional Food Chemistry, Institute of Applied Biosciences, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany (2)
Department of Biochemistry and Molecular Biology, University of Southern Denmark (SDU) (2)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (2)
Department of Biological Sciences, Vanderbilt University (2)
Department of Biotechnology, Delft University of Technology, The Netherlands. (2)
Department of Biotechnology, TU Delft, The Netherlands (2)
Department of Chemical and Systems Biology, Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, South Africa (2)
Department of Molecular Biology & the Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA (2)
Department of Zoology, Faculty of Science, Charles University, BIOCEV, Vestec and Prague, Czech Republic (2)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (2)
Duke University (2)
GSK (2)
George Mason University (2)
Harvard Medical School (2)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V., Otto-Hahn-Str. 6b, 44227 Dortmund, Germany (2)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
Molecular Structure of Cell Signalling Laboratory, The Francis Crick Institute (2)
Princeton University (2)
Proteomics Core Facility, School of Science, National and Kapodistrian University of Athens, Athens, Greece (2)

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Perspectives on refractory ceramic fiber (RCF) carcinogenicity: comparisons with other fibers.

Not available

S-EPMC4245174 | biostudies-literature

The effect of Repeated Cross Fostering (RCF) on transcriptomic profiles of mouse Ventral Tegmental Areas across different sexes and strains

Early life experiences affecting the attachment bond formation can result in maladaptive behaviors acting on developmental trajectories and programming adult brain functions in a sex-dependent manner. Repeated Cross Fostering (RCF) manipulation in mice is able to interfere with attachment bond forma...

ORGANISM(S): Mus musculus

2021-02-02 | GSE165922 | GEO

The effect of Repeated Cross Fostering (RCF) on transcriptomic profiles of mouse Ventral Tegmental Areas across different sexes and strains

PRJNA698577 | ENA

Bacteriophages RCF and 1-6bf can control the growth of avian pathogenic Escherichia coli.

Not available

S-EPMC11773471 | biostudies-literature

Integrative Molecular Concepts Modeling of Prostate Cancer Progression

Using laser capture microdissection to isolate over 100 specific cell populations, we report the profiling of prostate cancer progression from benign epithelium to metastatic disease. By analyzing these expression signatures in the context of over 15,000 â??molecular conceptsâ??, or sets of biologic...

ORGANISM(S): Homo sapiens

2010-06-05 | E-GEOD-6099 | biostudies-arrayexpress

Structural Characterization and Physicochemical Properties of Functionally Porous Proton-Exchange Membrane Based on PVDF-SPA Graft Copolymers.

Not available

S-EPMC10779367 | biostudies-literature

Binding interface prediction by combining protein-protein docking results.

Not available

S-EPMC3936310 | biostudies-literature

Recurrent circadian fasting (RCF) improves blood pressure, biomarkers of cardiometabolic risk and regulates inflammation in men.

Not available

S-EPMC6700786 | biostudies-literature

Clostridioides difficile-commensal interactions are impacted by diet more than differences between strain

The purpose of this study was to investigate how C. difficile metabolism differs between strains as a function of diet. We used three C. difficile strains (R20291, Cd4, and Cd10). Each strain was grown in three different media conditions designed to mimic different diet conditio...

2026-09-18 | MTBLS15045 | MetaboLights

Reducing Solvent Consumption in Reductive Catalytic Fractionation through Lignin Oil Recycling.

Not available

S-EPMC11351702 | biostudies-literature

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