Reid B B - OmicsDI

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Unknown (1498)
Proteomics (155)
Transcriptomics (107)
Genomics (21)
Metabolomics (4)
Genomic (1)

Organisms

Homo sapiens (162)
Mus musculus (25)
Vitis vinifera (15)
Rattus norvegicus (6)
Zea mays (4)
Arabidopsis thaliana (4)
Helicoverpa zea (2)
Drosophila melanogaster (2)
Enterococcus faecalis (2)
Botrytis cinerea (1)
Botrytis cinerea B05.10 (1)
Vitis sp. cv. 'Norton' (1)
Vitis riparia (1)
Euglena gracilis (1)
Musca domestica (1)
Dictyostelium discoideum (1)
Eimeria tenella (1)
Neospora caninum (1)
Macaca mulatta (1)
Toxoplasma gondii (1)
Medicago truncatula (1)
Listeria monocytogenes (1)
Plasmodium falciparum 3D7 (1)
Plasmodium chabaudi (1)
mixed sample (1)
Hordeum vulgare (1)
Bos taurus (1)
Saccharomyces cerevisiae (1)
Ancylostoma ceylanicum (1)
blank sample (1)

Organisms

Mus musculus (2)

Repository

biostudies-arrayexpress (111)
PeptideAtlas (97)
pride (29)
MassIVE (28)
EGA (15)
MetaboLights (4)
ENA (2)
dbGaP (1)
iProX (1)

Tissue

Digestive System (95)
Cell culture (4)
Permanent cell line cell (4)
Kidney (3)
T cell (2)
Female Reproductive System (1)
Ovary (1)
Anther (1)
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Blood cell (1)
Breast (1)
Cardiomyocyte cell line (1)
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Early embryonic cell (1)
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Liver (1)
Osteoblast (1)
Osteocyte (1)
Saliva (1)
Somatic cell (1)
Tooth enamel (1)
Whole body (1)

Disease

Amyotrophic lateral sclerosis (4)
Breast cancer (2)
Parasitic helminthiasis infectious disease (2)
CAMN (1)
E. lata infected plant without symptoms (1)
Infected by E. lata strain NE85-1 (1)
High Grade Ovarian Serous Adenocarcinoma (1)
Bone disease (1)
COVID-19 (1)
Disease free (1)
Hepatocellular carcinoma (1)
Huntington Disease (1)
Mitochondrial metabolism disease (1)

Technology Type

Mass Spectrometry (29)
Shotgun proteomics (17)
Bottom-up proteomics (6)
Mass spectrometry (4)
Data-dependent acquisition (3)
SWATH MS (3)
Data-independent acquisition (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Gel-based experiment (1)
Top-down proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (109)
Q Exactive (8)
Illumina HiSeq 2500 (5)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2000 (3)
NextSeq 500 (3)
LTQ Orbitrap Elite (3)
Q Exactive Plus (3)
Illumina HiSeq 4000 (2)
LTQ Orbitrap XL (2)
TimsTOF Pro (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina Genome Analyzer (1)
GenePix Professional 4200A [Axon Instruments] (1)
GenePix 4000B [Axon Instruments] (1)
HiSeq X Ten (1)
LTQ Velos (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
TripleTOF 5600 (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2014 (111)
2011 (22)
2019 (14)
2012 (14)
2022 (12)
2010 (12)
2013 (11)
2021 (10)
2020 (8)
2015 (8)
2024 (6)
2008 (6)
2026 (5)
2023 (4)
2009 (4)
2025 (3)
2016 (3)
2018 (3)
2017 (2)
2007 (1)
2006 (1)

UNIPROT ID/AC

A0A024RC46 (97)
A0A087WTX5 (97)
A0A087WVW2 (97)
A0A087WYL9 (97)
A0A087X130 (97)
A0A087X1V9 (97)
A0A0A0MS07 (97)
A0A0A0MS51 (97)
A0A0C4DG89 (97)
A0AVT1 (97)
A0FGR8 (97)
A0FGR8-2 (97)
A0FGR8-6 (97)
A0M8Q6 (97)
A0N5G5 (97)
A2BFH1 (97)
A2IPI2 (97)
A2IPI5 (97)
A2NKM6 (97)
A2NUT2 (97)
A2NXP9 (97)
A4F255 (97)
A5A3E0 (97)
A6NHL2 (97)
A6NNZ2 (97)
A8MTJ3 (97)
B1N7B8 (97)
B2RPK0 (97)
B3KML9 (97)
B3KT93 (97)

ENSEMBL ID

ENSG00000170477 (96)
ENSG00000229353 (49)
ENSG00000147251 (20)
ENSG00000247315 (3)
ENSG00000176092 (2)
ENSG00000204131 (2)

CHEBI ID

CHEBI:16870 (4)
CHEBI:15891 (3)
CHEBI:15354 (2)
CHEBI:15699 (2)
CHEBI:16010 (2)
CHEBI:16335 (2)
CHEBI:16704 (2)
CHEBI:16828 (2)
CHEBI:16857 (2)
CHEBI:16919 (2)
CHEBI:16946 (2)
CHEBI:18237 (2)
CHEBI:18344 (2)
CHEBI:30797 (2)
CHEBI:36274 (2)
CHEBI:37550 (2)
CHEBI:42111 (2)
CHEBI:73024 (2)
CHEBI:10072 (1)
CHEBI:104011 (1)
CHEBI:1148 (1)
CHEBI:116314 (1)
CHEBI:131993 (1)
CHEBI:132494 (1)
CHEBI:132502 (1)
CHEBI:132538 (1)
CHEBI:132539 (1)
CHEBI:132541 (1)
CHEBI:132542 (1)
CHEBI:132544 (1)

Metabolite Name

Choline (2)
Sn-glycero-3-phosphocholine (2)
(S)-AMPA (1)
1-octadecanoyl-sn-glycero-3-phosphocholine (1)
11,12-DiHETrE (1)
11,12-Epoxyeicosatrienoic acid (1)
11-HETE (1)
12-HETE (1)
12-Ketolithocholic acid (1)
13,14-Dihydro-15-keto PGF2a (1)
13S-hydroxyoctadecadienoic acid (1)
14,15-DHET (1)
14,15-Epoxy-5,8,11-eicosatrienoic acid (1)
15-HETE (1)
2,3-Dihydroxybenzoic acid (1)
2,3-Diphosphoglyceric acid (1)
2,4-Dinitrophenol (1)
2-Hydroxy-3-methylbutyric acid (1)
2-Hydroxybenzoic acid (1)
2-Hydroxybutanoic acid (1)
2-Isopropylmalic acid (1)
2-Ketobutyric acid (1)
2-Ketohexanoic acid (1)
2-Methylcitric acid (1)
2-Naphthalenesulfonic acid (1)
2-Pyrocatechuic acid (1)
20-Hydroxyeicosatetraenoic acid (1)
23-Nordeoxycholic acid (1)
3-Hydroxybenzaldehyde (1)
3-Hydroxybutanoic acid (1)

First Public Date

2024 (2)

Study type

Transcription profiling by array (57)
RNA-seq of coding RNA (24)
Methylation profiling by array (8)
Other (4)
Comparative genomic hybridization by array (3)
ChIP-seq (2)
RNA-seq of total RNA (2)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
Trajectory (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by array (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (177)
2023 (169)
2022 (166)
2025 (140)
2024 (130)
2020 (100)
2019 (98)
2018 (83)
2015 (75)
2014 (74)
2016 (63)
2017 (62)
2011 (57)
2013 (50)
2010 (43)
2012 (42)
2008 (21)
2009 (17)
2026 (17)
2006 (8)
2007 (5)
2003 (4)
2004 (2)
2002 (2)
2001 (2)
2005 (1)
1999 (1)

Lab affiliation

Department of Biochemistry and Molecular Biology; and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, VIC 3010. Australia (2)
Department of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Australia. (2)
NHMRC Senior Research Fellow Department of Biochemistry and Molecular Biology | Faculty of Medicine, Dentistry and Health Sciences Level 2 South, Bio21 Molecular Science and Biotechnology Institute, 30 Flemington Road The University of Melbourne, Victoria 3010 Australia (2)
Roswell Park Cancer Center Buffalo, NY, USA (2)
School of Life and Environmental Sciences, University of Sydney, NSW 2006 Australia (2)
Wellcome Centre for Cell-Matrix Research, Division of Cell-Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, UK. (2)
1.Wellcome Centre for Cell-Matrix Research, Division of Cell-Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, UK. (1)
BioArch South, Waitati, New Zealand (1)
Center for Advanced Regenerative Engineering, Northwestern University, Evanston, IL 60208, USA (1)
Department of Biochemistry and Molecular Biology and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, VIC 3010, Australia (1)
Department of Veterinary Biosciences, Melbourne Veterinary School, The University of Melbourne, Australia (1)
Harry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia 6009, Australia (1)
Infection Biology (1)
Laboratory Medicine and Pathology Mayo Clinic USA (1)
Melbourne Veterinary School, Faculty of Science, The University of Melbourne, Parkville, Victoria, Australia (1)
NHMRC Senior Research Fellow Department of Biochemistry and Molecular Biology | Faculty of Medicine, Dentistry and Health Sciences Level 2 South, Bio21 Molecular Science and Biotechnology Institute, 30 Flemington Road The University of Melbourne, Victoria 3010 Australia (1)
NHMRC Senior Research Fellow Department of Biochemistry and Molecular Biology | Faculty of Medicine, Dentistry and Health Sciences Level 2 South, Bio21 Molecular Science and Biotechnology Institute, 30 Flemington Road The University of Melbourne, Victoria 3010 Australia T: +61 3 8344 2530 | E: dhatters@unimelb.edu.au (1)
Professor Anthony W Purcell Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Monash University, Clayton Campus Clayton 3800 Victoria Australia (lab head) (1)
QIMR Berghofer Medical Research Institute (1)
State Key Laboratory of Genetic Engineering and Collaborative Innovation Center of Genetics and Development, Institute of Plant Biology, School of Life Sciences, Fudan University (1)
The Laboratory of Craniofacial Development and Biology, Section of Plastic and Reconstructive Surgery, University of Chicago Medicine (1)
The University of Melbourne (1)
Toronto General Hospital Research Institute, UniversityHealth Network, Toronto, Canada Department of Medicine, Division of Nephrology, University Health Network, Toronto, Canada (1)

Tags

xref:PubMed:38875504 (1)

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Proteomics analysis of B. bigemina

Protein from B. bigemina PR cell lysates was analysed by 1D SDS PAGE and in solution digestion. Digested peptides were analysed by on-line nanoflow liquid chromatography using the nanoACQUITY-nLC system (Waters MS technologies, Manchester, UK) coupled to an LTQ-Orbitrap Velos (ThermoFisher Scientifi...

ORGANISM(S): Babesia bigemina Babesia sp.

2014-06-16 | PXD000629 | Pride

IFN-γ-driven iNOS induction in macrophages mediates CAR T cell resistance in B cell lymphoma

Chimeric antigen receptor (CAR) T cell therapies have revolutionized B cell malignancy treatment, but subsets of patients with large B cell lymphoma (LBCL) experience primary resistance or relapse after CAR T cell treatment. To uncover tumor microenvironment (TME)-induced resistance mechanisms, we e...

ORGANISM(S): Mus musculus (Mouse)

2026-05-30 | PXD079073 | Pride

Macrophages B cell lymphoma Interferon Inos Chimeric antigen receptor t cell

IFN-γ-driven iNOS induction in macrophages mediates CAR T cell resistance in B cell lymphoma: Phosphoproteomics

ORGANISM(S): Mus musculus (Mouse)

2026-05-30 | PXD079082 | Pride

Macrophages B cell lymphoma Interferon Inos Chimeric antigen receptor t cell

The Eμ-Ret mouse is a novel model of hyperdiploid B-cell acute lymphoblastic leukemia

PRJNA1080191 | ENA

Early-life infection depletes preleukemic cells in a mouse model of hyperdiploid B-cell acute lymphoblastic leukemia

PRJNA1120376 | ENA

Absolute lymphocyte counts at end of induction correlate with distinct immune cell compartments in pediatric B cell precursor acute lymphoblastic leukemia.

Not available

S-EPMC11028201 | biostudies-literature

Pediatric age-associated DNA methylation

DNA methylation (DNAm) plays diverse roles in human biology, but this dynamic epigenetic mark remains far from fully characterized. Although earlier studies uncovered loci that undergo age-associated DNAm changes in adults, little is known about such changes during childhood. Despite profound DNAm p...

ORGANISM(S): Homo sapiens

2012-02-01 | E-GEOD-27097 | biostudies-arrayexpress

Lineage-Specific Genes Are Prominent DNA Damage Hotspots during Leukemic Transformation of B Cell Precursors.

Not available

S-EPMC5318656 | biostudies-literature

Vitamin B-12 Intake from Dairy but Not Meat Is Associated with Decreased Risk of Low Vitamin B-12 Status and Deficiency in Older Adults from Quebec, Canada.

Not available

S-EPMC9644171 | biostudies-literature

A cross-standardized flow cytometry platform to assess phenotypic stability in precursor B-cell acute lymphoblastic leukemia (B-ALL) xenografts.

Not available

S-EPMC9292200 | biostudies-literature

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1786 Results

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