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Unknown (11388)
Transcriptomics (768)
Proteomics (329)
Genomics (180)
Metabolomics (67)
Multiomics (7)
Genomic (2)
Other (2)

Organisms

Homo sapiens (493)
Mus musculus (291)
Drosophila melanogaster (46)
Caenorhabditis elegans (40)
Rattus norvegicus (37)
Saccharomyces cerevisiae (28)
Danio rerio (24)
Sus scrofa (20)
Arabidopsis thaliana (15)
Gallus gallus (11)
Zea mays (10)
Pseudomonas putida (8)
Escherichia coli (7)
Drosophila simulans (6)
Salmo salar (6)
Actinoplanes sp. SE50/110 (6)
Drosophila yakuba (5)
Drosophila pseudoobscura (4)
Daphnia magna (4)
Bos taurus (4)
Aplysia californica (3)
Panax ginseng (3)
Pseudomonas aeruginosa (3)
Fusarium fujikuroi (2)
Cucumis sativus (2)
Gossypium hirsutum (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (2)
Pan troglodytes (2)
Bacillus amyloliquefaciens (2)
Schistosoma mansoni (2)

Organisms

Homo sapiens (8)
Mus musculus (7)
Saccharomyces cerevisiae (4)
Escherichia coli (3)
Pseudomonas aeruginosa UCBPP-PA14 (1)
Escherichia coli K-12 (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (869)
pride (231)
iProX (73)
MetaboLights (66)
EGA (50)
ENA (29)
MassIVE (18)
LINCS (7)
PeptideAtlas (4)
geo (3)
dbGaP (2)
EVA (1)
GNPS (1)
GPMDB (1)
jPOST (1)

Tissue

Cell culture (61)
Epithelial cell (16)
Leaf (14)
Liver (14)
Testis (10)
Brain (9)
Permanent cell line cell (8)
Plant cell (8)
Blood plasma (7)
Cell suspension culture (6)
Fibroblast (6)
Kidney (6)
Lung (6)
Root (6)
B cell (5)
Heart (5)
Macrophage (5)
Others (4)
Blood serum (4)
Embryo (4)
Hepatocyte (3)
Oocyte (3)
Blood cell (2)
Bone marrow (2)
Embryonic stem cell (2)
Fungal cell (2)
HeLa cell (2)
Muscle (2)
Neuron of the forebrain (2)
Retina (2)

Disease

Disease free (14)
Colon cancer (4)
Normal (3)
Acute kidney tubular necrosis (2)
Breast cancer (2)
Cervix carcinoma (2)
Hepatocellular carcinoma (2)
Influenza (2)
Male infertility (2)
Ovarian cancer (2)
Rheumatoid arthritis (2)
Wounds and Injuries (2)
Hypertension (1)
Primary osteoarthritis (1)
Colon Cancer (1)
Diffuse large B cell lymphoma (1)
IRAK-4 Q293X mutation (1)
Primary nodular malignant melanoma (1)
Unknown (1)
Obesity (1)
Glioblastoma (1)
Colorectal adenocarcinoma (1)
Not Available (1)
Alzheimer's disease 18 (1)
Burkitt lymphoma (1)
Cognitive disorder (1)
Crohn's disease (1)
Dehydration (1)
Demyelinating disease (1)
Fungal infectious disease (1)

Technology Type

Mass Spectrometry (231)
Shotgun proteomics (110)
Bottom-up proteomics (48)
Mass spectrometry (40)
Data-dependent acquisition (26)
Affinity purification coupled with mass spectrometry proteomics (22)
Mass spectrometry assay (20)
Data-independent acquisition (13)
Gel-based experiment (12)
Fluorescence imaging (7)
Fluorescence intensity (7)
Top-down proteomics (7)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
NMR spectroscopy (5)
SWATH MS (5)
Proteogenomics (4)
Affinity proteomics (2)
Mass spectrometry imaging (2)
Human Cardio Metabochip (1)
ILLUMINA, Illumina HiSeq 2500, Illumina HumanMethylation450K, Illumina InfiniumCoreExome-24v1-1_A (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
All-ion fragmentation (1)
DiaPASEF (1)
Immunopeptidomics (1)
Olink affinity proteomics (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (52)
Illumina HiSeq 2500 (25)
NextSeq 500 (20)
Illumina HiSeq 2000 (13)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (6)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (6)
Illumina MiSeq (6)
See manuscript (5)
Illumina HiSeq 1500 (5)
Illumina HiSeq 4000 (5)
FastPrep‑24 homogenizer (MP Biomedicals) (4)
Illumina NovaSeq X (4)
Ion Torrent Proton (4)
NextSeq 550 (4)
NextSeq 2000 (3)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds. (2)
Bio-Rad T100 Thermocycler (2)
Other (2)
DNBSEQ-G400 (2)
Dell Precision Tower 7910 workstation (1)
Affymetrix GCS3000 7G SCANNER (1)
GeneChip Hybridization Oveer 640 (1)
KAPA RNA HyperPrep Kit (1)
NextSeq 500, 75 bp single end lane (1)
Illumina NovaSeq 6000 sequencing platform (Illumina) (1)
FACS Melody (1)
HIVE computer cluster (1)
Single nuclei were captured using the 10x Genomics Chromium Controller. (1)
S1000 Thermal Cycler (BioRad) (1)
SeekOne® Digital Droplet System (Seek Gene) (1)

Publication Date

2010 (122)
2014 (104)
2025 (101)
2015 (88)
2026 (81)
2022 (78)
2011 (77)
2013 (75)
2012 (73)
2016 (70)
2024 (64)
2021 (54)
2019 (45)
2023 (44)
2020 (41)
2008 (39)
2009 (37)
2017 (26)
2018 (21)
2007 (17)
2006 (10)
2004 (4)
2005 (2)

UNIPROT ID/AC

A0A024R563 (4)
A0A0A0MSA7 (4)
A0MZ66 (4)
A5A3E0 (4)
A5YM69 (4)
A6ND36 (4)
A6NNZ2 (4)
B4DPR2 (4)
B4E3A4 (4)
B7Z2U2 (4)
B7Z9B7 (4)
B7ZME8 (4)
C9JM50 (4)
C9JSZ1 (4)
C9JZR2 (4)
D6RE86 (4)
E5RK69 (4)
E7ESL9 (4)
E7EVA0 (4)
E9PFZ2 (4)
E9PKC0 (4)
E9PRE2 (4)
H0Y2V6 (4)
H0Y5B0 (4)
H0Y5C6 (4)
H0YDQ8 (4)
H0YFY6 (4)
H0YM50 (4)
H7BXH2 (4)
H7BY16 (4)

ENSEMBL ID

ENSG00000170477 (4)
ENSG00000147251 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:15354 (17)
CHEBI:15428 (14)
CHEBI:16335 (13)
CHEBI:16737 (13)
CHEBI:16919 (13)
CHEBI:28044 (13)
CHEBI:15891 (12)
CHEBI:16811 (12)
CHEBI:17562 (12)
CHEBI:17750 (12)
CHEBI:26271 (12)
CHEBI:30769 (12)
CHEBI:16708 (11)
CHEBI:17203 (11)
CHEBI:17596 (11)
CHEBI:22660 (11)
CHEBI:28300 (11)
CHEBI:32816 (11)
CHEBI:15603 (10)
CHEBI:15741 (10)
CHEBI:16027 (10)
CHEBI:16359 (10)
CHEBI:16449 (10)
CHEBI:16467 (10)
CHEBI:17351 (10)
CHEBI:17368 (10)
CHEBI:18132 (10)
CHEBI:18237 (10)
CHEBI:18257 (10)
CHEBI:24898 (10)

Metabolite Name

Creatinine (15)
Creatine (13)
Taurine (13)
Cytidine (12)
Inosine (12)
L-Glutamine (12)
Pyroglutamic acid (12)
Adenine (11)
Adenosine (11)
Betaine (11)
Choline (11)
Guanosine (11)
Hypoxanthine (11)
L-Arginine (11)
L-Serine (11)
Citric acid (10)
L-Phenylalanine (10)
L-Tyrosine (10)
Linoleic acid (10)
Phosphorylcholine (10)
Uridine (10)
L-Histidine (9)
L-Proline (9)
L-Valine (9)
Sucrose (9)
Uracil (9)
Glycine (8)
Guanine (8)
Ornithine (8)
Palmitic acid (8)

First Public Date

2014 (8)
2024 (7)
2026 (3)
2015 (3)
2023 (2)
2017 (2)
2022 (1)
2021 (1)
2019 (1)
2018 (1)

Classification

bacteria (5)

Modification

Not available (1)

Study type

Transcription profiling by array (397)
RNA-seq of coding RNA (163)
ChIP-seq (80)
ChIP-chip by tiling array (42)
RNA-seq of coding RNA from single cells (24)
Transcription profiling by tiling array (23)
ChIP-chip by array (17)
Methylation profiling by high throughput sequencing (17)
Other (13)
RNA-seq of non coding RNA (13)
Methylation profiling by array (12)
Comparative genomic hybridization by array (9)
RNA-seq of total RNA (7)
Unknown experiment type (6)
Cell line - High-throughput sequencing (4)
RIP-seq (4)
Animal - One-color microarray (3)
Plant - High-throughput sequencing (3)
Cell line - One-color microarray (3)
Animal - High-throughput sequencing (3)
Genotyping by array (3)
Transcription profiling by SAGE (2)
Human - Single-cell sequencing (2)
RNAi profiling by array (2)
MicroRNA profiling by array (2)
DNA-seq (2)
Proteomic profiling by array (2)
Baseline (1)
High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)

Release Date

2025 (1775)
2022 (1542)
2024 (1477)
2023 (1419)
2021 (1202)
2020 (826)
2019 (606)
2018 (525)
2017 (418)
2016 (417)
2015 (408)
2026 (298)
2014 (283)
2013 (205)
2010 (202)
2012 (191)
2011 (171)
2009 (101)
2008 (80)
2007 (35)
2006 (25)
2005 (20)
2004 (10)
2003 (5)
2002 (3)
2001 (2)
2000 (2)
1999 (2)

Lab affiliation

Professor and Director Center of Proteomic Analysis BGI-Shenzhen (5)
Agronomy College, Henan Agricultural University, China (3)
Beijing proteome research center (3)
Chinese Academy of Sciences Shanghai Institute of Materia Medica (3)
Gansu Provincial Key Lab of Aridland Crop Science/ Gansu Agricultural University, Lanzhou, China (3)
Manchester Academic Health Science Centre, Division of Cell Matrix Biology & Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester, UK (3)
Shanghaitech University (3)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (3)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (2)
Cell matrix biology and regenerative medicine, School of biological sciences, University of manchester (2)
Department of Clinical Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China. The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (2)
Department of Pharmacology, School of Basic Medical Sciences, Tianjin Medical University (2)
Department of Urology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China (2)
Hong Kong University of Science and Technology (2)
Hubei University of Medicine, Taihe Hospital (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Max Perutz Labs, Vienna BioCenter, University of Vienna Dr. Bohr-Gasse 9/5, 1030 Vienna, Austria (2)
Shandong University (2)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (2)
Shenzhen Center for Disease Control and Prevention (2)
Sichuan University (2)
State Key Laboratory for Innovation and Transformation of Luobing Theory; Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education, Chinese National Health Commission and Chinese Academy of Medical Sciences; Department of Cardiology, Qilu Hospital of Shandong University, Jinan, China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health, Department of Histology and Embryology, Gusu School, Nanjing Medical University (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
The Second Affiliated Hospital Zhejiang University School of Medicine (2)
The Second Hospital of Dalian Medical University (2)
Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Science, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin 300071, China (2)
Tianjin Medical University Cancer Institute and Hospital (2)
Zhejiang Provincial Key Laboratory of Medical Genetics, Key Laboratory of Laboratory Medicine, Ministry of Education, China, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University (2)
1 Biochemistry & Microbiology, University of Victoria, Victoria, BC, Canada 2 Genome BC Proteomics Centre, University of Victoria, Victoria, BC, Canada (1)

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scRNAseq libraries of pooled kidney samples from wild type (ZF1) versus CRISPR-targeted renin knockout (ZF2) zebrafish

Libraries were made to compare the transcriptome of renin lineage cells (RLCs) from wild-type versus ren knockout zebrafish kidneys. RLCs were FAC sorted from pooled kidneys of ren+/+ or ren-/- zebrafish, which carried ren:RFP and acta2:EGFP reporter genes, allowing the isolation of renin-expressin...

ORGANISM(S): Danio rerio

2022-06-10 | E-MTAB-11079 | biostudies-arrayexpress

Transcription profiling of two mesothelioma cell lines (MPP89 and REN), and of HMC-TERT non tumoral mesothelial cells

miRNA profile analysis of two mesothelioma cell lines (MPP89 and REN), and of HMC-TERT non tumoral mesothelial cells

ORGANISM(S): Homo sapiens

2008-10-09 | E-MEXP-1699 | biostudies-arrayexpress

Transcription profiling of human mesothelioma cells MPP-89 REN compared to mesothelial cells HMC-TERT

gene expression profile of mesothelioma cells (MPP-89; REN) compared to mesothelial cells (HMC-TERT)

ORGANISM(S): Homo sapiens

2008-10-09 | E-MEXP-1701 | biostudies-arrayexpress

Transcription profiling of human mesothelioma cells (MPP-89, REN) compared to mesothelial cells (HMC-TERT)

gene expression profiles of mesothelioma cells (MPP-89, REN) compared to mesothelial cells (HMC-TERT)

ORGANISM(S): Homo sapiens

2008-10-09 | E-MEXP-1700 | biostudies-arrayexpress

A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells

Genome-wide location analysis of transcription factor of c-Myc and Max was conducted using RenLab Hu6K array in Daudi cells. In comparison, the GWLA was also done for general transcription factor RNA polymerase II and TAF1, and sequence specific transcription factor E2F1 in the same cell line. Keyw...

ORGANISM(S): Homo sapiens

2010-06-10 | E-GEOD-2542 | biostudies-arrayexpress

Widespread N6-methyladenosine-dependent RNA Structural Switches Regulate RNA-Protein Interactions

We show that N6-methyladenosine (m6A), the most abundant internal modification in mRNA/lncRNA with still poorly characterized function, alters RNA structure to facilitate the access of RBM for heterogeneous nuclear ribonucleoprotein C (hnRNP C). We term this mechanism m6A-switch. Through combining P...

ORGANISM(S): Homo sapiens

2015-02-27 | E-GEOD-56010 | biostudies-arrayexpress

Transcripts regulated by elevated DKF-2 (WT background)

Transcriptional profiling was used to determine why DKF-2 (protein kinase D) deficiency and surfeit caused hypersensitivity and resistance, respectively, to a bacterial pathogen (P. aeruginosa 14). The studies show that DKF-2 contributes to C. elegans innate immunity by inducing expression of >75 ge...

ORGANISM(S): Caenorhabditis elegans

2009-01-12 | E-GEOD-12456 | biostudies-arrayexpress

Production of chain-extended cinnamoyl compounds by overexpressing two adjacent cluster-situated LuxR regulators in Streptomyces globisporus C-1027

Natural products from microorganisms are important sources for drug discovery. With the development of high-throughput sequencing technology and bioinformatics, a large amount of uncharacterized biosynthetic gene clusters (BGCs) in microorganisms have been found, which show the potential for nove...

2023-09-06 | MTBLS5152 | MetaboLights

Genetic Variant of C-5434T REN Enhancer on Serum Renin Levels and Binding Pattern of Signal Transducers and Activators Transcription 3.

Not available

S-EPMC4454770 | biostudies-literature

PU.1 and C/EBPalpha synergistically program distinct response to NF-kappaB activation through establishing monocyte specific enhancers (expression data)

Unraveling the complexity of transcriptional programs coded by different cell types has been one of the central goals of cell biology. Using genome-wide location analysis, we examined how two different cell types generate different responses to the NF-kappaB signaling pathway. We showed that, after ...

ORGANISM(S): Homo sapiens

2011-03-15 | E-GEOD-26868 | biostudies-arrayexpress

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12737 Results

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