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Unknown (7564)
Transcriptomics (501)
Genomics (490)
Proteomics (164)
Metabolomics (44)
Multiomics (8)
Genomic (1)
Other (1)

Organisms

Mus musculus (545)
Homo sapiens (332)
Caenorhabditis elegans (38)
Drosophila melanogaster (35)
Rattus norvegicus (23)
Danio rerio (17)
Saccharomyces cerevisiae (16)
Sus scrofa (10)
Zea mays (8)
Drosophila simulans (6)
Pseudomonas putida (6)
Arabidopsis thaliana (6)
Drosophila yakuba (5)
Drosophila pseudoobscura (4)
Salmo salar (4)
Escherichia coli (4)
Aplysia californica (3)
Pseudomonas aeruginosa (3)
Gallus gallus (3)
Cucumis sativus (3)
Dichelobacter nodosus (2)
Fusarium fujikuroi (2)
Bacillus amyloliquefaciens (2)
Schistosoma mansoni (2)
Canis lupus familiaris (2)
Clostridioides difficile 630 (1)
Babesia microti (1)
Solanum melongena (1)
Porphyromonas gingivalis ATCC 33277 (1)
Bacillus methanolicus (1)

Organisms

Saccharomyces cerevisiae (2)
Homo sapiens (2)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (950)
pride (97)
MetaboLights (43)
EGA (39)
iProX (39)
MassIVE (13)
jPOST (8)
ENA (6)
PeptideAtlas (4)
dbGaP (1)
GNPS (1)
GPMDB (1)
LINCS (1)
PanoramaPublic (1)

Tissue

Cell culture (23)
Testis (8)
Brain (7)
Epithelial cell (6)
Others (4)
Liver (4)
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Sperm (4)
B cell (3)
Blood plasma (3)
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Heart (3)
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Root (3)
Blood serum (2)
Embryo (2)
Embryonic stem cell (2)
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Leaf (2)
Macrophage (2)
Neuron of the forebrain (2)
Adenohypophysis (1)
Adipose tissue (1)
Blood cell (1)
Callus (1)
Cell suspension culture (1)
Cerebrospinal fluid (1)
Colon (1)
Egg (1)
Egg yolk (1)

Disease

Disease free (4)
Normal (3)
Breast cancer (3)
Hypertension (1)
Diffuse large B cell lymphoma (1)
IRAK-4 Q293X mutation (1)
Obesity (1)
Colorectal adenocarcinoma (1)
Not Available (1)
Alzheimer's disease 18 (1)
Ataxia telangiectasia (1)
COVID-19 (1)
Colon cancer (1)
Demyelinating disease (1)
Diffuse large B-cell lymphoma activated B-cell type (1)
Diffuse large B-cell lymphoma germinal center B-cell type (1)
Influenza (1)
Male infertility (1)
Myocardial ischemia (1)
Osteonecrosis (1)
Pancreatic ductal adenocarcinoma (1)
Polycystic Kidney (1)
Polycystic ovary syndrome (1)
Prostate adenocarcinoma (1)
Rheumatoid arthritis (1)
Severe acute respiratory syndrome (1)
Systemic lupus erythematosus (1)
Type 1 diabetes mellitus (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (97)
Shotgun proteomics (39)
Mass spectrometry (32)
Bottom-up proteomics (28)
Data-dependent acquisition (12)
Affinity purification coupled with mass spectrometry proteomics (10)
Mass spectrometry assay (8)
Gel-based experiment (6)
Top-down proteomics (4)
NMR spectroscopy (3)
SWATH MS (3)
Data-independent acquisition (2)
Mass spectrometry imaging (2)
Illumina HumanCoreExome-12v1-0, Illumina HumanCoreExome-12v1-1, Illumina HumanCoreExome-24v1-0 (1)
Fluorescence imaging (1)
Fluorescence intensity (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (30)
Illumina HiSeq 2500 (13)
NextSeq 500 (7)
Illumina HiSeq 2000 (5)
Illumina NovaSeq X (3)
Illumina HiSeq 4000 (3)
Other (2)
Ion Torrent Proton (2)
Dell Precision Tower 7910 workstation (1)
Affymetrix GCS3000 7G SCANNER (1)
GeneChip Hybridization Oveer 640 (1)
Bio-Rad T100 Thermocycler (1)
Single nuclei were captured using the 10x Genomics Chromium Controller. (1)
See manuscript (1)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (1)
FastPrep‑24 homogenizer (MP Biomedicals) (1)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (1)
Turbidostat (1)
Axon Instruments GenePix 4000B scanner (1)
High resolution C. scanner (1)
Agilent High resolution C scanner (1)
BAS-5000 [FUJIFILM] (1)
ScanArray Express HT (1)
Illumina Genome Analyzer II (1)
10x Genomics Chromium Controller (1)
DNBSEQ-G400 (1)
Illumina HiSeq 1000 (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)

Publication Date

2016 (426)
2010 (109)
2014 (61)
2013 (55)
2015 (51)
2025 (50)
2022 (48)
2012 (48)
2011 (43)
2024 (37)
2026 (36)
2008 (29)
2009 (25)
2023 (24)
2021 (22)
2019 (22)
2007 (17)
2020 (16)
2018 (12)
2017 (11)
2006 (10)
2005 (2)
2004 (2)

UNIPROT ID/AC

A0A024R563 (4)
A0A0A0MSA7 (4)
A0MZ66 (4)
A5A3E0 (4)
A5YM69 (4)
A6ND36 (4)
A6NNZ2 (4)
B4DPR2 (4)
B4E3A4 (4)
B7Z2U2 (4)
B7Z9B7 (4)
B7ZME8 (4)
C9JM50 (4)
C9JSZ1 (4)
C9JZR2 (4)
D6RE86 (4)
E5RK69 (4)
E7ESL9 (4)
E7EVA0 (4)
E9PFZ2 (4)
E9PKC0 (4)
E9PRE2 (4)
H0Y2V6 (4)
H0Y5B0 (4)
H0Y5C6 (4)
H0YDQ8 (4)
H0YFY6 (4)
H0YM50 (4)
H7BXH2 (4)
H7BY16 (4)

ENSEMBL ID

ENSG00000170477 (4)
ENSG00000147251 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:15354 (13)
CHEBI:15428 (12)
CHEBI:16335 (12)
CHEBI:30769 (12)
CHEBI:16919 (11)
CHEBI:17562 (11)
CHEBI:28044 (11)
CHEBI:32816 (11)
CHEBI:15741 (10)
CHEBI:16027 (10)
CHEBI:16708 (10)
CHEBI:16737 (10)
CHEBI:16811 (10)
CHEBI:18237 (10)
CHEBI:18257 (10)
CHEBI:22660 (10)
CHEBI:26271 (10)
CHEBI:7916 (10)
CHEBI:15603 (9)
CHEBI:15891 (9)
CHEBI:16040 (9)
CHEBI:16359 (9)
CHEBI:16449 (9)
CHEBI:16467 (9)
CHEBI:16704 (9)
CHEBI:16750 (9)
CHEBI:17203 (9)
CHEBI:17351 (9)
CHEBI:17368 (9)
CHEBI:17568 (9)

Metabolite Name

Choline (11)
Adenine (10)
Betaine (10)
Creatine (10)
Creatinine (10)
Cytidine (10)
Guanosine (10)
Hypoxanthine (10)
Inosine (10)
Adenosine (9)
L-Arginine (9)
L-Phenylalanine (9)
Phosphorylcholine (9)
Pyroglutamic acid (9)
Citric acid (8)
L-Glutamine (8)
L-Proline (8)
L-Serine (8)
L-Valine (8)
Taurine (8)
Uridine (8)
Xanthurenic acid (8)
ADP (7)
Cytosine (7)
Fumaric acid (7)
Glycine (7)
Guanine (7)
L-Histidine (7)
L-Tyrosine (7)
Methionine sulfoxide (7)

First Public Date

2014 (3)
2026 (2)
2025 (1)

Study type

ChIP-seq (439)
Transcription profiling by array (281)
RNA-seq of coding RNA (88)
ChIP-chip by tiling array (42)
Transcription profiling by tiling array (21)
Methylation profiling by array (12)
RNA-seq of coding RNA from single cells (10)
ChIP-chip by array (8)
Other (7)
Unknown experiment type (6)
Comparative genomic hybridization by array (6)
Methylation profiling by high throughput sequencing (4)
Cell line - One-color microarray (3)
RNA-seq of total RNA (3)
Animal - One-color microarray (2)
Genotyping by array (2)
DNA-seq (2)
Proteomic profiling by array (2)
Transcription profiling by SAGE (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
4C (1)
RIP-seq (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
CUT&RUN (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (1335)
2022 (1020)
2024 (1003)
2023 (928)
2021 (743)
2016 (646)
2020 (575)
2019 (383)
2018 (318)
2017 (256)
2015 (251)
2014 (196)
2026 (182)
2010 (156)
2013 (138)
2012 (118)
2011 (89)
2009 (53)
2008 (42)
2007 (28)
2006 (23)
2005 (13)
2004 (8)
2003 (3)
2000 (3)
2002 (1)
2001 (1)
1992 (1)

Lab affiliation

Chinese Academy of Sciences Shanghai Institute of Materia Medica (3)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
Hubei University of Medicine, Taihe Hospital (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (2)
State Key Laboratory for Innovation and Transformation of Luobing Theory; Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education, Chinese National Health Commission and Chinese Academy of Medical Sciences; Department of Cardiology, Qilu Hospital of Shandong University, Jinan, China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
The Second Affiliated Hospital Zhejiang University School of Medicine (2)
Zhejiang Provincial Key Laboratory of Medical Genetics, Key Laboratory of Laboratory Medicine, Ministry of Education, China, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University (2)
Zhejiang University (2)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
Aalborg University (1)
Anhui Science and Technology University (1)
Anhui agricultural university college of animal science and technology (1)
Beijing Academy of Agriculture and Forestry Sciences (1)
Ben May department of cancer research, The university of Chicago (1)
CSIRO Biomedical Manufacturing Biology R&D Group (1)
Chinese Academy of Sciences Shanghai Institute of MateriaMedica (1)
College of Agriculture, Guizhou University, Guiyang, Guizhou, China (1)
College of Animal Science and Technology, Anhui Agricultural University, P. R. China. (1)
College of Life Science, Northwest University (1)
DIRECTOR, THE PICOWER INSTITUTE FOR LEARNING AND MEMORYAT MIT PICOWER PROFESSOR OF NEUROSCIENCE, DEPARTMENT OF BRAIN AND COGNITIVE SCIENCES SENIOR ASSOCIATE MEMBER, BROAD INSTITUTE (1)
Department of Biology State Key Laboratory of Environmental and Biological Analysis Hong Kong Baptist University, Hong Kong (1)
Department of Biomedicine, Aarhus University (1)
Department of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania (1)
Department of Crop Genetics and Breeding, College of Agronomy, Gansu Agricultural University, Lanzhou, China. (1)
Department of Developmental Pathology, Institute of Pathology, University Hospital Bonn, Germany (1)
Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA 92697, USA (1)
Department of Gastroenterology, The First Affiliated Hospital of Naval Medical University, Shanghai, 200433, China (1)
Department of Laboratory Animals, College of Animal Sciences, Jilin University, Changchun 130062, Jilin, P.R. China (1)

Tags

xref:PubMed:40802766 (1)
xref:PubMed:17679090 (1)
xref:PubMed:41981657 (1)
xref:PubMed:19706510 (1)

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Gene expression profiling of constitutively competent comR and proQ mutants and RNase R (rnr) mutant of L. pneumophila

Bacterial competence is a genetically programmed process that is triggered as a response to environmental stimuli. DNA uptake from the extracellular milieu by competence requires the expression of a complex machinery composed of a competence pseudopilus and a DNA translocase. In L. pneumophila, it ...

ORGANISM(S): Legionella pneumophila

2010-05-20 | E-GEOD-12796 | biostudies-arrayexpress

Transcription profiling of two mesothelioma cell lines (MPP89 and REN), and of HMC-TERT non tumoral mesothelial cells

miRNA profile analysis of two mesothelioma cell lines (MPP89 and REN), and of HMC-TERT non tumoral mesothelial cells

ORGANISM(S): Homo sapiens

2008-10-09 | E-MEXP-1699 | biostudies-arrayexpress

Transcription profiling of human mesothelioma cells MPP-89 REN compared to mesothelial cells HMC-TERT

gene expression profile of mesothelioma cells (MPP-89; REN) compared to mesothelial cells (HMC-TERT)

ORGANISM(S): Homo sapiens

2008-10-09 | E-MEXP-1701 | biostudies-arrayexpress

Transcription profiling of human mesothelioma cells (MPP-89, REN) compared to mesothelial cells (HMC-TERT)

gene expression profiles of mesothelioma cells (MPP-89, REN) compared to mesothelial cells (HMC-TERT)

ORGANISM(S): Homo sapiens

2008-10-09 | E-MEXP-1700 | biostudies-arrayexpress

The Adhesion of Lactobacillus salivarius REN to a Human Intestinal Epithelial Cell Line Requires S-layer Proteins.

Not available

S-EPMC5345100 | biostudies-literature

DNAzyme-Functionalized R-Phycoerythrin as a Cost-Effective and Environment-Friendly Fluorescent Biosensor for Aqueous Pb2+ Detection.

Not available

S-EPMC6630308 | biostudies-literature

Herpes simplex virus type 1 (HSV-1) R-loops are targets for APOBEC-mediated mutagenesis

PRJNA1375651 | ENA

pcaGoPromoter - An R package for functional interpretation of principal component analysis of genome-wide gene expression data

Background and aim: Analysis of data obtained from genome wide gene expression experiments is challenging, due to the huge amount of variables, management of the data and the need for multivariate analysis. We here present the R package: pcaGoPromoter that facilitates the interpretation of genome wi...

ORGANISM(S): Homo sapiens

2011-05-01 | E-GEOD-27071 | biostudies-arrayexpress

Differential effects of TNFalpha and IL1beta on FLS global gene expression profile

TNFalpha and IL1beta play a pathogenic role in rheumatoid arthritis. Both cytokines are known to activate cytokine and metalloproteinase secretion by synovial fibroblasts. In the present study, we wanted to investigate whether TNFalpha and IL1beta displayed differential effects on cultured Fibroblas...

ORGANISM(S): Homo sapiens

2009-04-15 | E-GEOD-15615 | biostudies-arrayexpress

iSFun: an R package for integrative dimension reduction analysis.

Not available

S-EPMC9154261 | biostudies-literature

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