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ProteomicsCUT&Tag Overcomes Biases of ChIP and Establishes Chromatin Patterns for Repetitive Genomic Loci
Determining the genomic localization of chromatin features is an essential aspect of investigating gene expression control, and ChIP-Seq has long been the gold standard technique for interrogating chromatin landscapes. Recently, the development of alternative methods, such as CUT&Tag, have provided ...
ORGANISM(S): Mus musculus (Mouse) 
2025-08-26 | PXD067760 | Pride
Repetitive loci Mouse Ip-ms Chromatin Retrotransposons Chip 
TranscriptomicsGlobal hypomethylation identifies loci targeted for hypermethylation in head and neck cancer
This SuperSeries is composed of the following subset Series: GSE25083: Global hypomethylation identifies loci targeted for hypermethylation in head and neck cancer: normal head and neck tissue GSE25089: Global hypomethylation identifies loci targeted for hypermethylation in head and neck cancer: HNS...
ORGANISM(S): Homo sapiens 
2011-10-27 | E-GEOD-25093 | biostudies-arrayexpress
TranscriptomicsA unique epigenetic signature is associated with active DNA replication loci in human embryonic stem cells
The cellular epigenetic landscape changes as pluripotent stem cells differentiate to somatic cells or when differentiated cells transform to a cancerous state. These epigenetic changes are commonly correlated with differences in gene expression. Whether active DNA replication is also associated with...
ORGANISM(S): Homo sapiens 
2013-11-05 | E-GEOD-43152 | biostudies-arrayexpress
GenomicsCUT&Tag Identifies Repetitive Genomic Loci that are Excluded from ChIP Assays [CUT&Tag]
CUT&Tag Identifies Repetitive Genomic Loci that are Excluded from ChIP Assays [CUT&Tag]
PRJNA1219211 | ENA
GenomicsCUT&Tag Identifies Repetitive Genomic Loci that are Excluded from ChIP Assays [chromatin fractionation and sequencing]
CUT&Tag Identifies Repetitive Genomic Loci that are Excluded from ChIP Assays [chromatin fractionation and sequencing]
PRJNA1219201 | ENA
TranscriptomicsChromatin dynamics and genome-wide profiling of repetitive elements during early mammalian embryogenesis.
We have used repetitive elements, including retrotransposons, as model loci to address how and when heterochromatin forms during development. High throughput RNA-sequencing using a Nano-CAGE protocol throughout early embryogenesis revealed that the expression of repetitive elements is abundant in...
ORGANISM(S): Mus musculus 
2013-01-27 | E-GEOD-39849 | biostudies-arrayexpress
GenomicsATRX tolerates activity-dependent histone H3 M-bM-^@M-^\methyl/phos switchingM-bM-^@M-^] to maintain repetitive element silencing in neurons
ATRX is a member of the SWI2/SNF2 family of chromatin remodeling proteins and primarily functions at heterochromatic loci via its recognition of M-bM-^@M-^XrepressiveM-bM-^@M-^Y histone modifications (e.g., H3K9me3). Despite significant roles for ATRX during normal neural development, as well as its...
ORGANISM(S): Mus musculus 
2015-01-02 | E-GEOD-64062 | biostudies-arrayexpress
GenomicsCUT&Tag Identifies Repetitive Genomic Loci that are Excluded from ChIP Assays [CUT&Tag]
Determining the genomic localization of chromatin features is an essential aspect of investigating gene expression control, and ChIP-Seq has long been the gold standard technique for interrogating chromatin landscapes. Recently, the development of alternative methods, such as CUT&Tag, have provided ...
ORGANISM(S): Mus musculus 
2025-08-11 | GSE288759 | GEO
UnknownCUT&Tag Identifies Repetitive Genomic Loci that are Excluded from ChIP Assays.
Not available
S-EPMC11838576 | biostudies-literature
UnknownLive cell imaging of low- and non-repetitive chromosome loci using CRISPR-Cas9.
Not available
S-EPMC5424063 | biostudies-literature
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