Replicates. - OmicsDI

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Homo sapiens (10063)
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Instrument Platform

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NA (7)
N/A (7)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (6)
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See manuscript (5)

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UNIPROT ID/AC

1433T_HUMAN (1)
2A5D_YEAST (1)
2A5E_HUMAN (1)
2AAA_HUMAN (1)
2AAA_SCHPO (1)
2AAA_YEAST (1)
2ABA_HUMAN (1)
2ABA_SCHPO (1)
2ABA_YEAST (1)
2AD2_SCHPO (1)
3HAO_HUMAN (1)
3HAO_YEAST (1)
3MG1_ECOLI (1)
3PASE_ECOLI (1)
4F2_HUMAN (1)
511145.b0582 (1)
511145.b1402 (1)
511145.b1996 (1)
511145.b2394 (1)
511145.b2860 (1)
511145.b3045 (1)
511145.b4273 (1)
5DNU_ECOLI (1)
5NTD_HUMAN (1)
6P21_YEAST (1)
6PGD1_YEAST (1)
6PGD2_YEAST (1)
6PGD_ECOLI (1)
6PGD_HUMAN (1)
6PGD_SCHPO (1)

ENSEMBL ID

ENSMUSG00000098557 (2)
ENSMUSP00000141097 (2)
ENSMUSP00000141542 (2)

CHEBI ID

CHEBI:30769 (138)
CHEBI:15741 (131)
CHEBI:15428 (123)
CHEBI:16335 (114)
CHEBI:6650 (112)
CHEBI:28044 (109)
CHEBI:18012 (109)
CHEBI:16708 (98)
CHEBI:18186 (97)
CHEBI:28300 (96)
CHEBI:32816 (96)
CHEBI:17822 (95)
CHEBI:16811 (94)
CHEBI:17568 (93)
CHEBI:27266 (93)
CHEBI:25017 (91)
CHEBI:16704 (89)
CHEBI:27897 (89)
CHEBI:16449 (88)
CHEBI:30915 (87)
CHEBI:26271 (85)
CHEBI:24898 (85)
CHEBI:18237 (84)
CHEBI:17596 (84)
CHEBI:15756 (84)
CHEBI:17992 (83)
CHEBI:22660 (82)
CHEBI:48706 (1)
CHEBI:48705 (1)
CHEBI:38325 (1)

Metabolite Name

Adenine (85)
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Azelaic acid (62)
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Guanine (61)
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L-Tyrosine (57)
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Choline (55)
Succinic acid (54)
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Xanthine (54)
Glycine (53)
Methionine (53)
Creatine (53)
Valine (52)
Tyrosine (51)
Glycine (50)
Xanthosine (50)
Isoleucine (50)
Cytidine (50)

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Ordinary differential equation model (5)
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Terminated (1)

Lab affiliation

Head of the Curie Institute Mass Spectrometry Platform (52)
EDyP (44)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (34)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (32)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (27)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (24)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (22)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (19)
Wageningen University (18)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (17)
University of Edinburgh (17)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (16)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (16)
University of Florida (12)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (11)
Department of Biochemistry and Molecular Biology, University of Georgia, Athens (GA), USA. (11)
Department of Chemistry & Chemical Biology, Northeastern University (11)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences (11)
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Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (9)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (9)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (8)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (8)
Head of Proteomics (8)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse, France (8)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (8)
Moffitt Cancer Center Tampa, FL, USA (8)
Paris-Saclay Institute of Neuroscience, Team Melki, CNRS, Gif-sur-Yvette, France (8)

IsPrivate

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Model Flag

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Classification

bacteria (1506)
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Modification

2x(15)N labeled L-lysine (26)
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N6-dimethyl-L-lysine (12)
57.021464 (11)
N6 (11)
15.994915 (10)
4-tetrahydrothiazine-3-carboxylic acid (8)
Not available (7)
4x(2)H labeled dimethylated residue (6)
15.99491 (4)
4x(2)H labeled dimethylated L-lysine (4)
57.02146 (4)
-17.026549 (3)
42.010565 (3)
79.966331 (3)
-18.010565 (2)
0.984 (2)
4 (2)
203.0794 (1)
27.994915 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
42.01056 (1)
43.00581 (1)
56.026215 (1)
58.005479 (1)
79.96633 (1)

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1998 (13)
1999 (8)
1997 (1)

Location

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Leveraging biological replicates to improve analysis in ChIP-seq experiments.

Not available

S-EPMC3962196 | biostudies-literature

Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state

DNA replication programs have been studied extensively in yeast and animal systems, where they have been shown to correlate with gene expression and certain epigenetic modifications. Despite the conservation of core DNA replication proteins, little is known about replication programs in plants. We u...

ORGANISM(S): Arabidopsis thaliana

2011-07-06 | E-GEOD-30433 | biostudies-arrayexpress

EM-Seq for NAM lines with 2 replicates

PRJEB43263 | ENA

4D Label-Free Quantitative Phosphoproteomics of 12 Cell Samples (3 Groups with 4 Replicates Each)

ORGANISM(S): Homo sapiens (Human)

2026-06-11 | PXD074380 | Pride

Xa04306lpst

A comparison of strategies for generating artificial replicates in RNA-seq experiments.

Not available

S-EPMC9065086 | biostudies-literature

Differential peak calling of ChIP-seq signals with replicates with THOR.

Not available

S-EPMC5175345 | biostudies-literature

BEARscc: robustness of single-cell clusters determined using simulated technical replicates

PRJNA376200 | ENA

Technical replicates to determine array-to-array reproducibility.

Technical replicates, consisting of four independent hybridizations of the same labelled cRNA, were performed to determine array-to-array reproducibility. After normalization, correlation index between all replicates exceeded 98%.

ORGANISM(S): Sparus aurata

2009-02-20 | GSE12118 | GEO

Assessing the necessity of technical replicates in reverse transcription quantitative PCR.

Not available

S-EPMC12315840 | biostudies-literature

Testing network autocorrelation without replicates

Not available

S-EPMC9632870 | biostudies-literature

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