Ressom Habtom H

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Metabolomics (3)
Transcriptomics (2)
Proteomics (1)

Organisms

Homo sapiens (2)
Alphavirus (1)
Betaherpesvirinae (1)
Brassica oleracea var. oleracea (1)
Cowpox virus (1)
Coxsackievirus (1)
Cytomegalovirus (1)
Dengue virus (1)
EFO:0001352 (1)
Filoviridae (1)
Hepatitis B virus (1)
Human alphaherpesvirus 1 (1)
Human betaherpesvirus 5 (1)
Human immunodeficiency virus (1)
Human immunodeficiency virus 1 (1)
Human immunodeficiency virus 2 (1)
Influenza A virus (1)
Influenza C virus (1)
Japanese encephalitis virus (1)
Japanese encephalitis virus group (1)
Lyssavirus rabies (1)
Monkeypox virus (1)
Nostoc sp. PCC 7120 = FACHB-418 (1)
Oropouche virus (1)
Orthopoxvirus (1)
Orthopoxvirus vaccinia (1)
Rattus (1)
Ruditapes decussatus (1)
Tick-borne encephalitis virus (1)
Viruses (1)

Repository

MetaboLights (3)
biostudies-arrayexpress (2)
pride (1)

Tissue

Blood serum (1)

Technology Type

Mass spectrometry (3)
Affinity purification coupled with mass spectrometry proteomics (1)
Mass Spectrometry (1)

Instrument Platform

UPLC Q-TOF Premier (Waters) (2)
Agilent GC/MS, LECO GC/TOFMS (1)
5975C Series GC/MSD (Agilent) (1)

Publication Date

2011 (1)
2009 (1)
2015 (1)
2013 (1)
2022 (1)

CHEBI ID

CHEBI:16525 (2)
CHEBI:36274 (2)
CHEBI:27471 (2)
CHEBI:17687 (2)
CHEBI:72693 (1)
CHEBI:72772|CHEBI:72770 (1)
CHEBI:16790 (1)
CHEBI:72724 (1)
CHEBI:72727 (1)
CHEBI:6610|CHEBI:23527 (1)
CHEBI:40750 (1)
CHEBI:39640|CHEBI:39866 (1)
CHEBI:72726 (1)
CHEBI:87819 (1)
CHEBI:27471|CHEBI:36274 (1)
CHEBI:45847 (1)
CHEBI:72721 (1)
CHEBI:17036 (1)
CHEBI:72752 (1)
CHEBI:72691 (1)
CHEBI:67057 (1)
CHEBI:87818 (1)
CHEBI:52052 (1)
CHEBI:52347 (1)
CHEBI:15427 (1)
CHEBI:72718 (1)
CHEBI:72715 (1)
CHEBI:72741 (1)
CHEBI:72714 (1)
CHEBI:72736 (1)

Metabolite Name

Glycodeoxycholic acid (GDCA) (2)
4E,15Z-bilirubin IXa (1)
O-linoelaidylcarnitine (1)
Palmitylcarnitine (1)
N-tosyl-L-lysinyl methyl ketone (1)
Otadecadienoic acid (1)
Octadecadienal (1)
L-N2-(2-carboxyethyl)arginine (1)
Phenylmethyl methyl ketone (1)
10-hydroxy-2E,8E-decadiene-4,6-diynoic acid (1)
[Na+ + GCDCA] (1)
Fragment of GCA [− H2O] (1)
Fragment of GCA [− 2H2O] (1)
[Na+ + GDCA] (1)
Fragment of GCDCA [− H2O] (1)
Fragment of GCDCA [− 2H2O] (1)
Fragment of GDCA [−H2O] (1)
Fragment of GDCA [−2H2O] (1)
LPE (0:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (1)
LPE (22:6(4Z,7Z,10Z,13Z,16Z,19Z)/0:0) (1)
LPE (0:0/20:4(8Z,11Z,14Z,17Z)) (1)
LPE (20:4(8Z,11Z,14Z,17Z)/0:0) (1)
LPE (0:0/20:4(5Z,8Z,11Z,14Z) (1)
LPE (20:4(5Z,8Z,11Z,14Z)/0:0) (1)
Lythramine|cytochalasin B (1)
4-trifluoro methylaniline (1)
PS (O-18:0/0:0) (1)
LPE (20:3) (1)
LPC (15:0) (1)
Fragment of GCA (1)

Study type

Comparative genomic hybridization by array (1)
Transcription profiling by array (1)

Release Date

2011 (1)
2009 (1)

Lab affiliation

Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington DC (1)

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Designing workflows for large-scale Omic Based biomarker identification for hepatocellular carcinoma

Ter-polymer (MMA/EGDMA/1,2-Epoxy-5-Hexene) is fabricated via the polymerization using ethylene glycol di-methacrylate (EGDMA) as polar crosslinker. The oxirane groups of ter-polymer are immobilized with cysteic acid to enhance the hydrophilicity of HILIC sorbent. The enrichment efficacy is evaluated...

ORGANISM(S): Homo sapiens (Human)

2022-10-14 | PXD030890 | Pride

GC-MS Based Plasma Metabolomics for Identification of Candidate Biomarkers for Hepatocellular Carcinoma in Egyptian Cohort

This study evaluates changes in metabolite levels in hepatocellular carcinoma (HCC) cases vs. patients with liver cirrhosis by analysis of human blood plasma using gas chromatography coupled with mass spectrometry (GC-MS). Untargeted metabolomic analysis of plasma samples from participants recruited...

2015-08-13 | MTBLS105 | MetaboLights

LC−MS Based Serum Metabolomics for Identification of Hepatocellular Carcinoma Biomarkers in Egyptian Cohort

Although hepatocellular carcinoma (HCC) has been subjected to continuous investigation and its symptoms are well-known, early stage diagnosis of this disease remains difficult and the survival rate after diagnosis is typically very low (3−5%). Early and accurate detection of metabolic changes in the...

2013-06-30 | MTBLS19 | MetaboLights

Utilization of metabolomics to identify serum biomarkers for hepatocellular carcinoma in patients with liver cirrhosis

Characterizing the metabolic changes pertaining to hepatocellular carcinoma (HCC) in patients with liver cirrhosis is believed to contribute towards early detection, treatment, and understanding of the molecular mechanisms of HCC. In this study, we compare metabolite levels in sera of 78 HCC cases w...

MTBLS17 | MetaboLights

Copy number analysis of human glioblastoma multiforme

Copy number analysis of human GBM samples were performed, and a high frequency of deletions of the PTPRD gene on chromosome 9p23-24.1 were identified. Keywords: SNP microarray, glioblastoma multiforme, copy number, amplification, deletion Genomic DNA from 58 GBM tumor samples were hybridized to Aff...

ORGANISM(S): Homo sapiens

2009-01-04 | E-GEOD-13021 | biostudies-arrayexpress

Expression data of MCF-7 cells treated with gamma tocotrienol (g-T3)

Gamma tocotrienol induces apoptosis in breast cancer cells however, the molecular mechanisms are not completely understood. We used microarrays to detail the global programme of gene expression underlying the effects of gamma tocotrienols on MCF-7 cells and identified distinct classes of up-regulate...