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MetabolomicsIntegration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance
The development of reliable, mixed-culture biotechnological processes hinges on understanding how microbial ecosystems respond to disturbances. Here we reveal extensive phenotypic plasticity and niche complementarity in oleaginous microbial populations from a biological wastewater treatment plant. W...
2021-04-06 | MTBLS2021 | MetaboLights
MetabolomicsIn plaque-mass spectrometry imaging of a bloom-forming alga during viral infection reveals a metabolic shift towards odd-chain fatty acid lipids (GC- and LC-MS assays)

Tapping into the metabolic cross-talk between a host and its virus can reveal unique strategies employed during infection. Viral infection is a dynamic process that generates an evolving metabolic landscape. Gaining a continuous view into the infection process is highly challenging and is limited...

2018-11-29 | MTBLS767 | MetaboLights
ProteomicsConfident identification of citrullination and carbamylation assisted by peptide retention time prediction
We used 2D-LC-MS/MS methods to examine the impact of the biologically important PTM citrullination and its analogue carbamylation on peptide retention. Three first-dimension separation systems were evaluated: high-pH, HILIC and SCX, with the instrument interface separation happening at low-pH RP for...
ORGANISM(S): Bos Taurus (ncbitaxon:9913) Sus Scrofa (ncbitaxon:9823) Gallus Gallus (ncbitaxon:9031) Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) 
MSV000086214 | MassIVE
TranscriptomicsTranscription profiling by array of Candida albicans populations exposed to a temperature shift from 25 degrees to 37 degrees
Seperate White and Opaque Candida albicans populations were exposed to a temperature shift from 25 degrees to 37 degrees. Samples were then harvested at various time points to follow the effects of the shift on the two cell types, particularly the opaque cell type which switches to the white cell ...
ORGANISM(S): Candida albicans 
2011-05-08 | E-MEXP-2705 | biostudies-arrayexpress
ProteomicsHuman blood plasma circadian lipidome misalignment due to night shift simulation
Blood plasma was collected from a total of 14 subjects participating in a between-groups, in-laboratory study. Healthy volunteers (ages 22-34, BMI average 25.7) were assigned to a 3 day simulated night-shift schedule (6 male, 1 female) or a simulated day-shift (i.e., control, 4 male, 3 female) sched...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000086152 | MassIVE
UnknownFragmentation stability and retention time-shift obtained by LC-MS/MS to distinguish sialylated N-glycan linkage isomers in therapeutic glycoproteins.
Not available
S-EPMC10124117 | biostudies-literature
ProteomicsA fatty acid oxidation-dependent metabolic shift regulates adult neural stem cell quiescence
Adult hippocampal neurogenesis is important for certain forms of cognition and failing neurogenesis has been implicated in neuropsychiatric diseases. The neurogenic capacity of hippocampal neural stem/progenitor cells (NSPCs) depends on a balance between quiescent and proliferative states. However, ...
ORGANISM(S): Mus musculus (Mouse) 
2019-11-15 | PXD005598 | Pride
Quiescence Fatty acid oxidation Neural stem cell 
GenomicsEffect of sludge retension time on membrane bioreactor
Impact of sludge retention time on the fine composition of the microbial community and extracellular polymeric substances in a membrane bioreactor
PRJEB12017 | ENA
UnknownMeasurement of Information Transfer During Simulated Sequential Complete Shift-to-Shift Intraoperative Handoffs.
Not available
S-EPMC9762072 | biostudies-literature
UnknownTemperature and solids retention time control microbial population dynamics and volatile fatty acid production in replicated anaerobic digesters.
Not available
S-EPMC4329568 | biostudies-literature
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