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TranscriptomicsDe Novo Assembly and Characterization of Stress Transcriptome in a salinity-Tolerant Variety CS52 of Brassica juncea
Oilseed mustard, Brassica juncea, exhibits high levels of genetic variability for salinity tolerance. To obtain the global view of transcriptome and investigate the molecular basis of salinity tolerance in a salt-tolerant variety CS52 of B. juncea, we performed transcriptome sequencing of control an...
ORGANISM(S): Brassica juncea 
2015-02-28 | E-GEOD-66389 | biostudies-arrayexpress
GenomicsThe Genomic Binding Sites of an Endogenous Non-Coding RNA
Long non-coding RNAs (lncRNAs) have important regulatory roles and can function at the level of chromatin. To determine where lncRNAs bind to chromatin, we developed CHART, a hybridization-based technique that specifically enriches endogenous RNAs along with their targets from reversibly-crosslinked...
ORGANISM(S): Drosophila melanogaster 
2011-12-07 | E-GEOD-28180 | biostudies-arrayexpress
UnknownToxicity Assessment of Long-Term Exposure to Non-Thermal Plasma Activated Water in Mice.
Not available
S-EPMC8583710 | biostudies-literature
GenomicsGenome-wide Analysis of Histone Methylations in Memory CD8+ T Cells
Histone methylations play a major role in regulating the chromatin state and gene expression, yet little is known about their involvement in differential gene expression and function of memory CD8 T cells. Here, we report a genome-wide analysis of two histone H3 methylations (H3K4me3 and H3K27me3) ...
ORGANISM(S): Homo sapiens 
2009-06-12 | E-GEOD-12616 | biostudies-arrayexpress
TranscriptomicsThe Pitx2:miR-200c/141:noggin pathway regulates BMP signaling and ameloblast differentiation
The mouse incisor is a remarkable tooth that grows throughout the animalM-bM-^@M-^Ys lifetime. This continuous renewal is fueled by epithelial stem cells that give rise to ameloblasts, which generate enamel, and little is known about the function of specific miRNAs in this process. Here we describe ...
ORGANISM(S): Mus musculus 
2013-07-09 | E-GEOD-48583 | biostudies-arrayexpress
TranscriptomicsHistone methylations and gene expression in naïve, central (TCM) and effector (TEM) memory CD8 T cells.
Histone methylations play a major role in regulating the chromatin state and gene expression, yet little is known about their involvement in differential gene expression and function of memory CD8 T cells. Here, we report a genome-wide analysis of two histone H3 methylations (H3K4me3 and H3K27me3) ...
ORGANISM(S): Homo sapiens 
2009-03-06 | E-GEOD-14422 | biostudies-arrayexpress
TranscriptomicsSorted cells_PS2APP brains_7/13mo
Mice of indicated ages and genotypes were perfused and their brains dissected and dissociated. Cells were fixed, immunolabeled and FACS sorted. RNA was extracted from neuron, astrocyte, and microglial cell populations. Typical RIN=4-5 for neurons, 6-8 for astrocytes, and 5-7 for microglia. Typical R...
ORGANISM(S): Mus musculus 
2016-01-26 | E-GEOD-75431 | biostudies-arrayexpress
ProteomicsQuantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data-Independent Acquisitions (SWATH)
Posttranslational modification of lysine residues by Nepsilon-acylation is an important regulator of protein function. Many large-scale protein acylation studies have assessed relative changes of lysine acylation sites using mass spectrometry-based proteomics. While relative acylation fold-changes...
ORGANISM(S): Bos Taurus (ncbitaxon:9913) Escherichia Coli (ncbitaxon:562) 
2016-05-26 | MSV000079779 | MassIVE
TranscriptomicsRegulation of Puf2 Expression is Critical for Plasmodium Sporozoite Development and Maintenance of Sporozoite Transmissibility
MalariaM-bM-^@M-^Ys cycle of infection requires parasite transmission between a mosquito vector and a vertebrate host. Plasmodium regulates transmission by translationally repressing specific mRNAs until their products are needed. We demonstrate that the Plasmodium yoelii Pumilio-FBF family member P...
ORGANISM(S): Plasmodium yoelii yoelii 17XNL 
2012-10-27 | E-GEOD-41873 | biostudies-arrayexpress
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