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Homo sapiens (66)
Mus musculus (26)
Porphyromonas gingivalis (4)
Arabidopsis thaliana (4)
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Porphyromonas gingivalis ATCC 33277 (3)
Porphyromonas gingivalis W50 (3)
Caenorhabditis remanei (2)
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Prevotella intermedia ATCC 25611 = DSM 20706 (2)
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Porphyromonas gingivalis W83 (1)
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Treponema denticola ATCC 35405 (1)

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biostudies-arrayexpress (77)
pride (44)
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Mass Spectrometry (44)
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2010 (11)
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CHEBI ID

CHEBI:15741 (3)
CHEBI:15891 (3)
CHEBI:16704 (3)
CHEBI:16856 (3)
CHEBI:17858 (3)
CHEBI:18012 (3)
CHEBI:18237 (3)
CHEBI:24898 (3)
CHEBI:28300 (3)
CHEBI:15356 (2)
CHEBI:15422 (2)
CHEBI:15713 (2)
CHEBI:15721 (2)
CHEBI:16027 (2)
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CHEBI:17562 (2)
CHEBI:17568 (2)
CHEBI:17596 (2)

Metabolite Name

Uridine (2)
(R)-lactic acid (1)
(S)-malic acid (1)
2'-deoxyuridine (1)
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IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (30)
RNA-seq of coding RNA (13)
ChIP-seq (9)
Methylation profiling by array (4)
Unknown experiment type (3)
RNA-seq of total RNA (3)
RNA-seq of non coding RNA (3)
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ChIP-chip by array (2)
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Baseline (1)
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Release Date

2022 (301)
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2021 (245)
2025 (242)
2024 (241)
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1998 (1)

Lab affiliation

Department of Chemistry, University of California, Riverside (2)
Department of Molecular Biology, Radboud Institute for Molecular Life Sciences, Radboud University, Nijmegen, The Netherlands (2)
Melbourne Dental School, University of Melbourne, Australia (2)
1 Department of Immunology, Interfaculty Institute for Cell Biology, Tübingen, Germany 2 German Cancer Consortium (DKTK), DKFZ Partner Site Tübingen, Tübingen, Germany (1)
Aalborg University (1)
Bio21 Institute, Melbourne Dental School, University of Melbourne (1)
Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, 3C584 CG Utrecht, The Netherlands (1)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute, Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K. (1)
Centre for Genomics and Computational Biology Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ Tel: +44 (0)20 7882 8266 | Fax: +44 (0)20 7882 3891 | Email: p.cutillas@qmul.ac.uk (1)
Centre for Haemato-oncology, Barts Cancer Institute, Queen Mary University of London, London, EC1M6BQ, UK (1)
Centre for Tumor Biology, Barts Cancer Institute – a CR-UK Centre of Excellence, Queen Mary University of London, John Vane Science Centre, Charterhouse Square, London, EC1M 6BQ, United Kingdom (1)
Chromosomal Replication Laboratory, Institute for Cancer and Genomic Sciences, IBR west, WX2.62, University of Birmingham, Edgbaston, Birmingham, B15 2TT (1)
Department of Biochemistry and Molecular Biology University of Arkansas for Medical Sciences USA (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Chemistry, Sun's Lab, Michigan State University, USA (1)
Department of Genetics, Stanford University (1)
Department of Pharmaceutics and Pharmacotherapy (1)
Department of Pharmaceutics and Pharmacotherapy, Virginia Commonwealth University (1)
Dr Aga Gambus, Reader in Genome Replication, Wellcome and Lister Fellow, Chromosomal Replication Laboratory, Institute for Cancer and Genomic Sciences, IBR west, WX2.67, University of Birmingham, Edgbaston, Birmingham, B15 2TT (1)
Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, Australia (1)
Instituto de Ecología, A.C., (1)
LIST-ERIN-BEAP, Belvaux, LUXEMBOURG (1)
Laureate Professor Eric C Reynolds Melbourne Dental School The University of Melbourne 720 Swanston Street, VIC 3010 Tel. +61 3 9341 1547 Fax. + 61 3 9341 1596 Email: e.reynolds@unimelb.edu.au (1)
Max Delbrueck Center, Berlin, Germany Berlin Institute of Health, Berlin, Germany (1)
Melbourne Dental School (1)
Melbourne Dental School, Bio21 Institute, University of Melbourne (1)
Melbourne Dental School, The University of Melbourne (1)
Melbourne Dental School, University of Melbourne (1)
Melbourne Dental School, University of Melbourne Parkville, Victoria, Australia (1)
Melbourne Dental School, University of Melbourne, Victoria, Australia (1)

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Production and properties of adhesin-free gingipain proteinase RgpA

To obtain RgpA free of adhesin requires a means of separating the RgpA catalytic domain from the adhesins domains or adaptation of a method to prevent RgpA complex association.In this study, recombinant suicide plasmids were designed for use in homologous recombination with the rgpA locus so as to p...

ORGANISM(S): Porphyromonas gingivalis W50

2023-06-02 | PXD036859 | Pride

Lc-msms

Analysis of the transcriptional response of Candida parapsilosis following exposure to farnesol

We used the results of a genome sequence survey to design and manufacture partial genomic microarrays that were applied to determining the transcriptional response of C. parapsilosis to the presence of exogenous farnesol. Keywords: drug response, farnesol, Transcriptional profiling was performed fo...

ORGANISM(S): Candida parapsilosis

2010-06-11 | E-GEOD-6318 | biostudies-arrayexpress

C-terminal glycosylation of type IX secretion system cargo proteins in Prevotella intermedia bearing both short and long secretion signals

Prevotella intermedia is a Gram-negative bacterium that is notably linked to periodontitis and acute necrotizing ulcerative gingivitis. P. intermedia is known to utilise the T9SS to secrete and anchor virulence factors to the cell surface, presumably via C-terminal modification of the cargo protein ...

ORGANISM(S): Prevotella intermedia ATCC 25611 = DSM 20706

2025-05-07 | PXD057272 | Pride

Glycosylation Secretion signal Surface proteins Prevotella intermedia Alaninamide Mass spectrometry Protein secretion

High-Reynolds-number fractal signature of nascent turbulence during transition.

Not available

S-EPMC7035509 | biostudies-literature

Rapid evolution of phenotypic plasticity and shifting thresholds of genetic assimilation in the nematode Caenorhabditis remanei

Many organisms can acclimate to new environments through phenotypic plasticity, a complex trait that can be heritable, subject to selection, and evolve. However, the rate and genetic basis of plasticity evolution remain largely unknown. We experimentally evolved outbred populations of the nematode C...

ORGANISM(S): Caenorhabditis remanei

2014-05-04 | E-GEOD-56510 | biostudies-arrayexpress

Material properties of Caenorhabditis elegans swimming at low Reynolds number.

Not available

S-EPMC2820645 | biostudies-literature

Significance of Reynolds Number Consistency in Non-Newtonian Hemodynamic Simulations: Insights from Fontan Circulation.

Not available

S-EPMC12777659 | biostudies-literature

Comparison of the Framingham and Reynolds Risk scores for global cardiovascular risk prediction in the multiethnic Women's Health Initiative.

Not available

S-EPMC3324658 | biostudies-literature

Hepatitis C virus infects the endothelial cells of the blood-brain barrier.

Not available

S-EPMC3801216 | biostudies-literature

We previously identified a novel SNF1/AMPK-related protein kinase, Hunk, from a mammary tumor arising in an MMTV-neu transgenic mouse. The function of this kinase is unknown. Using targeted deletion in mice, we now demonstrate that Hunk is required for the metastasis of c-myc-induced mammary tumors,...

ORGANISM(S): Mus musculus

2009-12-31 | E-GEOD-14226 | biostudies-arrayexpress

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