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TranscriptomicsTranscriptomic profiling of L-rhamnose utilization in Lmo0753 deletion mutant of Listeria monocytogenes EGDe from human foodborne outbreak associated lineage LII
Among the three major genetic lineages of L. monocytogenes (i.e. LI, LII, and LIII), LI and LII are predominantly associated with foodborne listeriosis outbreaks, whereas LIII is rarely implicated in human infections. In a previous study, we identified a Crp/Fnr family transcription factor lmo0753 t...
ORGANISM(S): Listeria monocytogenes 
2013-07-17 | E-GEOD-47721 | biostudies-arrayexpress
TranscriptomicsExpression analysis of L-rhamnose catabolism in the yeast Scheffersomyces stipitis
In Scheffersomyces stipitis and related fungal species the genes for L-rhamnose catabolism RHA1, LRA2, LRA3 and LRA4 but not LADH are clustered. We find that located next to the cluster is a transcription factor, TRC1, which is conserved among related species.Our transcriptome analysis shows that al...
ORGANISM(S): Scheffersomyces stipitis CBS 6054 
2011-11-23 | E-GEOD-28557 | biostudies-arrayexpress
ProteomicsVitamin B12 stimulates 1,2-propanediol utilization in bacterial microcompartments of Listeria monocytogenes making anaerobic growth on rhamnose possible
This study was conducted in order to monitor whether or not Listeria monocytogenes is able to form bacterial microcompartment for rhamnose metabolism by deploying 1,2-propanediol bacterial microcompartment shell proteins and encapsulated enzymes.
ORGANISM(S): Listeria monocytogenes EGD 
2021-06-21 | PXD025734 | Pride
Rhamnose metabolism 1 Bacterial microcompartment 2-propanediol utilization anaerobic growth Listeria monocytogenes 
TranscriptomicsRNA-seq analysis of Clostridium beijerinckii DSM 6423 at early exponential, acetogenic, and solventogenic growth phase on rhamnose compared to glucose
This experiment aim was to characterize the catabolism of L-rhamnose of Clostridium beijerinckii DSM 6423 by transcriptomic analysis, generating new insights and knowledge on utilization of L-rhamnose for production of chemicals, including Isopropanol, Butanol, Ethanol (IBE) and 1,2-propandiol. The...
ORGANISM(S): Clostridium beijerinckii 
2019-01-14 | E-MTAB-7487 | biostudies-arrayexpress
TranscriptomicsAspergillus niger RhaR, a regulator involved in L-rhamnose release and catabolism
The genome of the filamentous fungus Aspergillus niger is rich in genes encoding pectinases, a broad class of enzymes that have been extensively studied due to their use in industrial applications. The sequencing of the A. niger genome provided more knowledge concerning the individual pectinolytic ...
ORGANISM(S): Aspergillus niger 
2014-03-13 | E-GEOD-51023 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis lrx1 root hair mutant and the suppressor mutations lrx1 rol1-1 and lrx1 rol1-2
Genome wide gene expression profile of the lrx1 root hair mutant and the suppressor mutations lrx1 rol1-1 and lrx1 rol1-2.
ORGANISM(S): Arabidopsis thaliana 
2006-06-05 | E-MEXP-722 | biostudies-arrayexpress
TranscriptomicsRNA-seq to investigate how small RNA ncS27 in Burkholderia cenocepacia regulates uptake and metabolism of carbon compounds
Burkholderia cenocepacia small RNA ncS27 was identified by transcriptome profiling. To investigate the function of this small RNA, ncS27 was overexpressed and silenced in trans and the effect of this on the transcriptome was studied. To overexpress ncS27 it was cloned into a vector with a rhamnose i...
ORGANISM(S): Burkholderia cenocepacia 
2019-09-13 | E-MTAB-7330 | biostudies-arrayexpress
TranscriptomicsL-rhamnose globally changes the transcriptome of planktonic and biofilm Escherichia coli cells and modulates biofilm growth
L-rhamnose, a naturally abundant sugar, plays diverse biological roles in bacteria, influencing biofilm formation and pathogenesis. This study investigates the global impact of L-rhamnose on the transcriptome and biofilm formation of PHL628 E. coli under various experimental conditions. We compared ...
ORGANISM(S): Escherichia coli 
2024-09-17 | GSE274311 | GEO
TranscriptomicsExpression analysis of L-rhamnose catabolism in the yeast Scheffersomyces stipitis
In Scheffersomyces stipitis and related fungal species the genes for L-rhamnose catabolism RHA1, LRA2, LRA3 and LRA4 but not LADH are clustered. We find that located next to the cluster is a transcription factor, TRC1, which is conserved among related species.Our transcriptome analysis shows that al...
ORGANISM(S): Scheffersomyces stipitis CBS 6054 
2011-11-23 | GSE28557 | GEO
TranscriptomicsIn vivo functional analysis of L-rhamnose metabolic pathway in Aspergillus niger: a tool to identify the potential inducer of RhaR
The genes of the non-phosphorylative L-rhamnose catabolic pathway have been identified for several yeast species. In Pichia stipitis, all L-rhamnose pathway genes are organized in a cluster, which is conserved in Aspergillus niger, except for the lra-4 ortholog (lraD). The A. niger cluster also cont...
ORGANISM(S): Aspergillus niger 
2017-09-14 | GSE99865 | GEO
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