Rice blast - OmicsDI

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Unknown (1054)
Genomics (288)
Transcriptomics (184)
Proteomics (48)
Metabolomics (4)
Methylation profiling (1)

Organisms

Oryza sativa (84)
Pyricularia oryzae (37)
Oryza sativa Japonica Group (33)
Andropogon gerardi (24)
Bacteria (24)
Canis lupus familiaris (24)
Cnidaria (24)
Cricetulus griseus (24)
Eukaryota (24)
Fasciola (24)
Hepatitis B virus (24)
Human betaherpesvirus 5 (24)
Madurella mycetomatis (24)
Pyricularia grisea (13)
Oryza sativa Indica Group (12)
Pyricularia oryzae 70-15 (12)
Salmo trutta (3)
Gallus gallus (3)
Pyricularia oryzae KJ201 (3)
Pyricularia oryzae P131 (3)
cellular organisms (2)
Neurospora discreta (1)
Neurospora tetrasperma (1)
Fusarium oxysporum (1)
Oryza longistaminata (1)
Tribolium castaneum (1)
Zea mays (1)
Hordeum vulgare (1)
Triticum aestivum (1)
Magnaporthe (1)

Organisms

Oryza sativa (51)
Pyricularia oryzae (43)
Oryza sativa Japonica Group (10)
Pyricularia grisea (7)
Pyricularia oryzae 70-15 (7)
Oryza sativa Indica Group (6)
Oryza (3)
Bacillus velezensis (3)
Pyricularia oryzae KJ201 (2)
Chryseobacterium endophyticum (2)
Oryza minuta (2)
Oryza brachyantha (2)
unidentified (2)
Streptomyces sp. NK08203 (1)
Pyricularia sp. 18-2 (1)
Pyricularia oryzae B157 (1)
Pyricularia oryzae Mo-nwi-31 (1)
Pyricularia oryzae Mo-nwi-55 (1)
Pyricularia oryzae MG01 (1)
Oncidium hybrid cultivar (1)
Priestia sp. (1)
Rhizoctonia solani AG-1 IA (1)
shoot metagenome (1)
Pantoea eucrina (1)
Kosakonia sacchari (1)
Zygosporium masonii (1)
Streptomyces murinus (1)
Pyricularia oryzae P131 (1)
seed metagenome (1)
Microbacterium testaceum (1)

Repository

ENA (274)
biostudies-arrayexpress (98)
geo (97)
pride (24)
iProX (18)
ExpressionAtlas (4)
jPOST (2)
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PanoramaPublic (2)
MassIVE (1)
PAXDB (1)

Tissue

Leaf (8)
Mycelium (3)
Plant cell (3)
Seeds (2)
Conidium (2)
Meiotic cell (2)
Milk (2)
Mycelial cord (2)
Appressorium (1)
Callus (1)
Cell culture (1)
Egg (1)
Embryo (1)
Endosperm (1)
Flower (1)
Fungal spore (1)
Hyphal cell (1)
Liver (1)
Mycelial felt (1)
Photosynthetic cell (1)
Pollen (1)
Seed (1)
Seedling (1)
Semen (1)
Sperm (1)
Spore (1)
Whole body (1)

Disease

Fungal infection (2)

Technology Type

Mass Spectrometry (26)
Shotgun proteomics (18)
Mass spectrometry (2)
ESI (2)
Affinity purification coupled with mass spectrometry proteomics (2)
EI (1)
All-ion fragmentation (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 1500 (2)
Agilent G2505B scanner (1)
Illumina Genome Analyzer IIx (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap Elite (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2012 (33)
2016 (23)
2015 (20)
2010 (19)
2014 (12)
2013 (12)
2024 (12)
2009 (11)
2022 (11)
2020 (10)
2023 (10)
2025 (9)
2019 (9)
2018 (9)
2011 (8)
2021 (7)
2017 (6)
2008 (6)
2026 (5)
2004 (3)
2007 (2)
2005 (2)
2006 (2)

UNIPROT ID/AC

14331_ORYSJ (1)
14332_ORYSJ (1)
14333_ORYSJ (1)
14334_ORYSJ (1)
14335_ORYSJ (1)
14336_ORYSJ (1)
2ABA_ORYSJ (1)
40C1_ORYSJ (1)
40G2_ORYSJ (1)
40G3_ORYSJ (1)
4CL3_ORYSJ (1)
4CL4_ORYSJ (1)
4CLL1_ORYSJ (1)
4CLL4_ORYSJ (1)
4CLL5_ORYSJ (1)
6PGD1_ORYSJ (1)
6PGD2_ORYSJ (1)
6PGL2_ORYSJ (1)
6PGL3_ORYSJ (1)
6PGL4_ORYSJ (1)
A0A024FLK4_ORYSJ (1)
A0A0N7KC78_ORYSJ (1)
A0A0N7KD71_ORYSJ (1)
A0A0N7KDZ0_ORYSJ (1)
A0A0N7KE18_ORYSJ (1)
A0A0N7KE80_ORYSJ (1)
A0A0N7KEH6_ORYSJ (1)
A0A0N7KET0_ORYSJ (1)
A0A0N7KEW3_ORYSJ (1)
A0A0N7KF42_ORYSJ (1)

CHEBI ID

CHEBI:189528 (1)
CHEBI:189527 (1)
CHEBI:189523 (1)
CHEBI:189519 (1)
CHEBI:189515 (1)
CHEBI:189513 (1)
CHEBI:189507 (1)
CHEBI:189506 (1)
CHEBI:189505 (1)
CHEBI:189504 (1)
CHEBI:189503 (1)
CHEBI:189502 (1)
CHEBI:189500 (1)
CHEBI:174548 (1)
CHEBI:189499 (1)
CHEBI:189497 (1)
CHEBI:189494 (1)
CHEBI:189493 (1)
CHEBI:189492 (1)
CHEBI:189491 (1)
CHEBI:189490 (1)
CHEBI:90748 (1)
CHEBI:189488 (1)
CHEBI:189484 (1)
CHEBI:189483 (1)
CHEBI:189482 (1)
CHEBI:189481 (1)
CHEBI:189480 (1)
CHEBI:189479 (1)
CHEBI:189478 (1)

Metabolite Name

1-({(1s,4s,6s)-6-isopropyl-3-methyl-4-[2-(4-methyl-1-piperazinyl)-2-oxoethyl]-2-cyclohexen-1-yl}methyl)-3-(3-methoxyphenyl)urea (1)
N-({(2r,4s,5r)-5-[3-(3,4-dimethoxyphenyl)-1-methyl-1h-pyrazol-5-yl]-1-azabicyclo[2.2.2]oct-2-yl}methyl)-2-ethylbutanamide (1)
Diffractic acid (1)
6-o-[(2e)-3-(4-hydroxyphenyl)-2-propenoyl]-1-o-[(2e)-3-phenyl-2-propenoyl]-beta-d-glucopyranose (1)
4-methoxybenzaldehyde n-[6-(tert-butyl)thieno[3,2-d]pyrimidin-4-yl]hydrazone (1)
4-(4-chlorophenyl)-n-(2-pyridinylmethyl)cyclohexanecarboxamide (1)
4h-1-benzopyran-4-one, 6-beta-d-glucopyranosyl-2,3-dihydro-5,7-dihydroxy-2-(4-hydroxyphenyl)-, (s)- (Hemiphloin) (1)
(3r,4s)-4,6,8-trihydroxy-7-methoxy-3-methyl-3,4-dihydro-1h-isochromen-1-one (1)
1,4:3,6-dianhydro-2,5-dideoxy-2-{[4-(3-fluorophenyl)-2-pyrimidinyl]amino}-5-[(methoxyacetyl)amino]-l-iditol (1)
Cetirizine n-oxide (1)
Adb-pinaca pentanoic acid metabolite (1)
5,8-dihydroxy-4-oxo-1,2,3,4-tetrahydro-1-naphthalenyl 6-o-(3,4,5-trihydroxybenzoyl)-beta-d-glucopyranoside (1)
Methyl (1s,4ar,6s,7r,7as)-1-(beta-d-glucopyranosyloxy)-4a,7-dihydroxy-6-{[(2e)-3-(4-hydroxyphenyl)-2-propenoyl]oxy}-7-methyl-1,4a,5,6,7,7a-hexahydrocyclopenta[c]pyran-4-carboxylate (1)
Methyl 4-{2-cyano-2-[(4-methylphenyl)sulfonyl]vinyl}-2,5-dimethyl-1h-pyrrole-3-carboxylate (1)
N-[(6as,8s)-2-(2,3-dimethylphenyl)-6,12-dioxo-5,6,6a,7,8,9,10,12-octahydropyrido[2,1-c][1,4]benzodiazepin-8-yl]nicotinamide (1)
4-[4-(4-hydroxy-3-methoxyphenyl)tetrahydro-1h,3h-furo[3,4-c]furan-1-yl]-2-methoxyphenyl hexopyranoside (1)
4-[(1s,3as,4r,6ar)-3a-hydroxy-4-(4-hydroxy-3-methoxyphenyl)tetrahydro-1h,3h-furo[3,4-c]furan-1-yl]-2-methoxyphenyl beta-d-glucopyranoside (1)
N4-acetyl sulfamethazine (1)
2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxo-4h-chromen-3-yl 6-o-(6-deoxyhexopyranosyl)-4-o-[(2e)-3-(4-hydroxyphenyl)-2-propenoyl]hexopyranoside (1)
Fr 145237 (1)
Ethyl {(1s,4s,5s)-4-[(isonicotinoylamino)methyl]-5-isopropyl-2-methyl-2-cyclohexen-1-yl}acetate (1)
2-hydroxy-4-(4-hydroxyphenyl)butanoic acid (1)
2-(tert-butylsulfonyl)-3-(3-methylbenzo[b]thiophen-2-yl)acrylonitrile (1)
2-hydroxy-4-methoxy-3-(3-methyl-2-buten-1-yl)-6-[(e)-2-phenylvinyl]benzoic acid (1)
N-(2-fluorophenyl)-2-methyl-6-(trifluoromethyl)nicotinamide (1)
Metazachlor-esa (1)
Aica ribonucleotide (1)
2-[(3s)-1-(cyclohexylmethyl)-3-pyrrolidinyl]-5-fluoro-1h-benzimidazole (1)
N-(4-{(2r,3r)-3-(hydroxymethyl)-4-[(1-methyl-1h-imidazol-2-yl)methyl]-5-oxo-2-morpholinyl}phenyl)-2-methylpropanamide (1)
3-hydroxy-3,5,5-trimethyl-4-(3-oxo-1-buten-1-ylidene)cyclohexyl Beta-d-glucopyranoside (1)

First Public Date

2024 (34)
2023 (33)
2014 (30)
2025 (26)
2026 (24)
2013 (22)
2022 (17)
2020 (17)
2019 (16)
2018 (13)
2016 (13)
2021 (11)
2015 (9)
2017 (8)
2010 (1)

Classification

bacteria (3)

Modification

15.994915 (1)
57.021464 (1)
79.966331 (1)

Study type

Transcription profiling by array (57)
RNA-seq of coding RNA (20)
RNA-seq of non coding RNA (8)
Unknown experiment type (6)
Transcription profiling by SAGE (3)
Plant - High-throughput sequencing (2)
ChIP-chip by array (2)

Release Date

2022 (130)
2024 (106)
2021 (92)
2023 (89)
2025 (72)
2020 (68)
2018 (65)
2016 (63)
2019 (63)
2012 (61)
2017 (60)
2015 (57)
2014 (45)
2013 (41)
2010 (28)
2011 (22)
2009 (20)
2026 (19)
2008 (16)
2007 (11)
2005 (7)
2006 (7)
2003 (4)
2004 (1)
2002 (1)
2001 (1)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Science4Life, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (2)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (2)
Huazhong Agricultural University (2)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China (1)
College of Biology, Hunan University (1)
College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China. (1)
Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA (1)
Department of Plant Bioscience, Life and industry Convergence Research Institute, Pusan National University, Miryang 50463, South Korea (1)
Department of Plant Pathology, University of Nebraska, Lincoln,NE (1)
Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, B-9000 Ghent, Belgium (1)
Director at the Center for Integrated Fungal Research (CIFR), North Carolina State University (NCSU), USA (1)
Division of Maternal Fetal Medicine Department of Obstetrics and Gynecology Oregon Health & Science University 3181 SW Sam Jackson Park Road, Mail Code L-458, Portland, OR, 97239, USA (1)
Institute of Integrative Biology, University of Liverpool (1)
Instituto de Agricultura Sostenible-CSIC Av. Menéndez Pidal s/n Campus Alameda del Obispo Apartado 4084, 14080 Córdoba, Spain (1)
Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Research Center of Super Rice Engineering and Technology, Jiangxi Agricultural University. No. 1101 Zhimin Avenue, Economic and Technological Development Zone, Nanchang City, Jiangxi Province (1)
Max Planck Institute for Plant Breeding Research Plant Proteomics Group Carl von Linné Weg 10 50829 Cologne Germany (1)
Plant Stress Physiology and Proteomics Laboratory, College of General Education, Kookmin University, Seoul, South Korea (1)
State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China (1)
State key laboratory of crop genetics and germplasm enhancement, college of agriculture, Nanjing Agricultural University, China (1)
The Sainsbury Laboratory (1)
frank.menke@tsl.ac.uk (1)

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OsWRKY39 regulates phenylpropanoid metabolic reprogramming to orchestrate rice immunity against Magnaporthe oryzae

Magnaporthe oryzae threatens global rice production, but master regulators coordinating immunity, metabolism, and growth remain elusive. Here, we identify OsWRKY39 as a central hub integrating blast resistance, phenylpropanoid metabolism, hormone homeostasis, and growth-defense trade-offs, distin...

2025-12-05 | MTBLS13460 | MetaboLights

Multi-omics of OsGF14b-mediated innate immunity against panicle blast in rice

Not available

ORGANISM(S): Oryza sativa Japonica Group

ST001330 | MetabolomicsWorkbench

Analysis of the Interaction Transcriptome During Biotrophic Invasion of Rice by the Blast Fungus, Magnaporthe oryzae

This SuperSeries is composed of the following subset Series: GSE8517: Magnaporthe oryzae gene expression during biotrophic invasion of rice using version 2 of the Agilent Magnaporthe grisea Array (G4137B). GSE8518: Rice gene expression during biotrophic invasion by the rice blast fungus Magnaporthe...

ORGANISM(S): Magnaporthe oryzae

2009-04-08 | E-GEOD-8670 | biostudies-arrayexpress

Multi-omics of OsGF14b-mediated innate immunity against panicle blast in rice (part-II)

Not available

ORGANISM(S): Oryza sativa Japonica Group

ST001331 | MetabolomicsWorkbench

Plant elicitor peptide signalling confers rice resistance to piercing-sucking insect herbivores and pathogens

Rice is a staple food crop worldwide, and its production is severely threatened by phloem-feeding insect herbivores, particularly the brown planthopper (BPH, Nilaparvata lugens), and destructive pathogens. Despite the identification of many BPH resistance genes, the molecular basis of rice resistanc...

2022-02-23 | MTBLS3518 | MetaboLights

Gene expression in rice leaves (Pish) in response to inoculation with rice blast fungus

Fourth leaves of rice seedlings (4.5 leaf stage) grown in hydroponic culture were inoculated with rice blast fungus and gene expression profiles were analyzed by microarray. Fourth leaves of the two isogenic lines of rice cv Nipponbare (blast-resistance gene: Pish or its mutant, pish) were inoculate...

ORGANISM(S): Oryza sativa Japonica Group

2015-04-01 | E-GEOD-62894 | biostudies-arrayexpress

Comparison of transcript abundance in mycelium from the rice blast fungus Magnaporthe oryzae grown in rich medium and in minimal medium using RNA-Seq

Mycelium from the rice blast fungus Magnaporthe oryzae was grown in both rich medium and under nutrient limiting conditions. Genes were identified that were more highly expressed in one condition as compared to the other. Samples were taken from mycelium grown in both complete medium and in glucose ...

ORGANISM(S): Magnaporthe oryzae

2012-02-13 | E-GEOD-30327 | biostudies-arrayexpress

A single functional blast resistance gene Pi54 activates complex defense mechanism in Rice

To investigate the responses of resistance gene Pi54 at transcriptome level in blast resistant transgenic rice line TP-Pi54 during infection by Magnaporthe oryzae, we studied the co-expression analysis using microarray along with susceptible non-transgenic line Taipei 309 (TP). Suitable controls ...

ORGANISM(S): Oryza sativa Japonica Group

2011-12-08 | E-GEOD-28308 | biostudies-arrayexpress

Gene expression in rice leaves (Pia) in response to inoculation with rice blast fungus

ORGANISM(S): Oryza sativa Japonica Group

2015-04-01 | E-GEOD-62893 | biostudies-arrayexpress

Magnaporthe oryzae Gene Expression During Biotrophic Invasion of Rice (Agilent Array, G4137B)

The hemibiotrophic fungus Magnaporthe oryzae produces specialized biotrophic invasive hyphae (IH) that alter membrane structure and defense responses in invaded rice cells. IH successively invade live neighbor cells, apparently through plasmodesmata. Understanding fungal and rice genes that contri...

ORGANISM(S): Oryza sativa

2009-04-08 | E-GEOD-8517 | biostudies-arrayexpress

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