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MetabolomicsMetabolome-based prediction of yield heterosis contributes to the breeding of elite rice
The improvement of breeding efficiencies for heterotic and climate-resilient crops can mitigate the food shortage crisis from overpopulation and climate change. Thus far, diverse molecular markers have been utilized for guiding field phenotypic selections, while the accurate predictions of complex h...
2019-12-10 | MTBLS742 | MetaboLights
MetabolomicsOsTTG1-dependent gene activation confer chilling tolerance in colored rice
Metabolomic analysis of anthocyanin accumulation in colored rice under cold stress
2024-07-31 | MTBLS9234 | MetaboLights
TranscriptomicsTranscriptomic Analysis of Responses to Imbalanced Carbon:Nitrogen Availabilities in Rice Seedlings
Rice is an important model for cereals and a staple crop worldwide. Understanding C-N nutrients interaction in rice should also help to compare and contrast the mechanisms for the regulation of C:N balance between plants accumulating high levels of photosynthates such as cereals and those that do no...
ORGANISM(S): Oryza sativa Japonica Group 
2017-03-02 | E-MTAB-5118 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of rice seedlings after stress treatment
Drought, salinity and sub-optimal temperatures are stresses that cause adverse effects on the growth of plants and the productivity of crops. In this study, we have analyzed the expression profiles of rice genes under control and abiotic stress conditions using microarray technology to identify the ...
ORGANISM(S): Oryza sativa 
2008-11-08 | E-GEOD-6901 | biostudies-arrayexpress
TranscriptomicsTranscriptomic shifts in rice roots in response to Cr (VI) stress
Detailed analysis of genome-wide transcriptome profiling in rice root is reported here, following Cr-plant interaction. Such studies are important for the identification of genes responsible for tolerance, accumulation and defense response in plants with respect to Cr stress. Rice root metabolome an...
ORGANISM(S): Oryza sativa Indica Group 
2010-11-11 | E-GEOD-25206 | biostudies-arrayexpress
TranscriptomicsExpression data of one-week-old rice seedlings exposed to Pi-deficient solution for 6, 24, 48, 72 hours
Expression profiles of one-week-old rice seedlings exposed to Pi-deficient solution for 6, 24, 48, 72 hours were monitored by microarray that contains approximately 60,000 rice clones (Affymetrix GeneChip). The probes were prepared from RNAs isolated from rice seedlings exposed to Pi-deficient solut...
ORGANISM(S): Oryza sativa Japonica Group 
2012-06-17 | E-GEOD-35984 | biostudies-arrayexpress
GenomicsChIP-seq to identify the positions of three histone modifications in the rice genome
Gene expression is controlled by the complex interaction of transcription factors binding to promoters and other regulatory DNA elements. One common characteristic of the genomic regions associated with regulatory proteins is a pronounced sensitivity to DNase I digestion. We generated genome-wide ...
ORGANISM(S): Oryza sativa 
2011-11-09 | E-GEOD-26733 | biostudies-arrayexpress
ProteomicsTMT-based Comparative Peptidomic Analysis of Rice Seedlings under Salt Stress
A tandem mass tag (TMT)-based comparative peptidomics analysis of rice seedlings under salt stress was conducted. Rice seedlings were exposed to 50 and 150 mM NaCl for 24 and 72 h, respectively, and the root and shoot tissues of different treatment groups were collected separately for the peptidomic...
ORGANISM(S): Oryza sativa (Rice) 
2023-03-11 | PXD037574 | Pride
Rice seedlings Comparative peptidomics Salt stress Nano lc-ms/ms 
TranscriptomicsTranscriptome of rice seedling and callus based on RNA-seq method
To support our research of epigenomics in rice genome, we conducted massively parallel pyrosequencing of mRNAs (RNA-seq) using rice seedling and callus tissues. We obtained a total of 40.1 M reads from seedling and 29.6 M reads from callus.The RNA-seq data derived from the replicates showed high cor...
ORGANISM(S): Oryza sativa Japonica Group 
2011-11-09 | E-GEOD-33265 | biostudies-arrayexpress
TranscriptomicsExpression profiling of small RNAs in control and H2O2-treated rice seedlings
We aimed to identify putative H2O2-regulated miRNAs expressed in rice seedlings under oxidative stress by using a deep sequencing approach developed by Solexa (Illumina). Two small RNA libraries were constructed from H2O2-treated and control rice seedlings, and more than five million small RNA seque...
ORGANISM(S): Oryza sativa 
2010-08-15 | E-GEOD-23217 | biostudies-arrayexpress
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