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ModelsKoo2013 - Shear stress induced calcium influx and eNOS activation - Model 1
Andrew Koo, David Nordsletten, Renato Umeton, Beracah Yankama, Shiva Ayyadurai, Guillermo García-Cardeña & C. Forbes Dewey. In silico modeling of shear-stress-induced nitric oxide production in endothelial cells through systems biology. Biophysical Journal 104, 10 (2013). Nitric oxide (NO) produced...
2024-09-02 | BIOMD0000000464 | BioModels
ModelsKoo2013 - Shear stress induced AKT and eNOS phosphorylation - Model 2
Andrew Koo, David Nordsletten, Renato Umeton, Beracah Yankama, Shiva Ayyadurai, Guillermo García-Cardeña & C. Forbes Dewey. In silico modeling of shear-stress-induced nitric oxide production in endothelial cells through systems biology. Biophysical Journal 104, 10 (2013). Nitric oxide (NO) produced...
2024-09-02 | BIOMD0000000465 | BioModels
ModelsKoo2013 - Shear stress induced eNOS expression - Model 3
Andrew Koo, David Nordsletten, Renato Umeton, Beracah Yankama, Shiva Ayyadurai, Guillermo García-Cardeña & C. Forbes Dewey. In silico modeling of shear-stress-induced nitric oxide production in endothelial cells through systems biology. Biophysical Journal 104, 10 (2013). Nitric oxide (NO) produced...
2024-09-02 | BIOMD0000000466 | BioModels
ModelsKoo2013 - Shear stress induced NO production - Model 4
Andrew Koo, David Nordsletten, Renato Umeton, Beracah Yankama, Shiva Ayyadurai, Guillermo García-Cardeña & C. Forbes Dewey. In silico modeling of shear-stress-induced nitric oxide production in endothelial cells through systems biology. Biophysical Journal 104, 10 (2013). Nitric oxide (NO) produced...
2024-09-02 | BIOMD0000000467 | BioModels
ProteomicsViral lncRNA upregulates multiple A+U-richViral lncRNA upregulates multiple A+U-rich transcripts to promote cell motility and viral dissemination transcripts to promote cell motility and viral dissemination
Long non-coding RNAs are frequently associated with broad modulation of gene expression and thus provide the cell with the ability to synchronize entire metabolic processes. We used transcriptomic and proteomic approaches to investigate whether the most abundant human cytomegalovirus-encoded lncRNA,...
ORGANISM(S): Human herpesvirus 5 strain Merlin Homo sapiens (Human) 
2021-07-27 | PXD022277 | Pride
Cell motility Gene regulation Lncrna A+u rich Transcriptomics Human cytomegalovirus Viral dissemination 
TranscriptomicsComparative genomics of Staphylococcus aureus and the application of a “pan-genome” for assigning RNA-Seq transcript reads from divergent strains and in vivo human nasal samples
in vitro comparison between two MRSA grown in rich (BHI) and poor media (SNM), compared with the nasal metatranscriptome reads of S. aureus. Global expression profile of two MRSA strains of S.aureus harvested in two different growth phases and compared with a metatranscriptome nose sample of a S. au...
ORGANISM(S): Staphylococcus aureus 
2015-01-05 | E-GEOD-56294 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E. coli wild type and hns strains in rich dYT medium sampled in mid-exponential phase (ME), transition to stationary (TS) and late stationary phase (LS)
Growth curves wt and hns strains in rich dYT medium. Sample in Mid-exponential phase (ME), Transition to Stationary (TS) and Late Stationary phase (LS).
ORGANISM(S): Escherichia coli 
2005-10-31 | E-MEXP-464 | biostudies-arrayexpress
ModelsKoo2013 - Integrated shear stress induced NO production model
Andrew Koo, David Nordsletten, Renato Umeton, Beracah Yankama, Shiva Ayyadurai, Guillermo García-Cardeña & C. Forbes Dewey. In silico modeling of shear-stress-induced nitric oxide production in endothelial cells through systems biology. Biophysical Journal 104, 10 (2013). Nitric oxide (NO) produced...
2024-09-02 | BIOMD0000000468 | BioModels
GenomicsA SNF2 protein targets variable copy number repeats and thereby influences allele-specific expression
ATRX is an X-linked gene of the SWI/SNF family whose role in vivo is currently unknown. Mutations in ATRX cause syndromal mental retardation. ATRX binds to tandem repeat (TR) sequences both in heterochromatin (e.g. telomeres) and euchromatin. Genes associated with these TRs can be dysregulated when ...
ORGANISM(S): Homo sapiens 
2010-11-02 | E-GEOD-22162 | biostudies-arrayexpress
ProteomicsRegulation of Leucine-Rich Repeat Kinase 2 by inflammation and IL-4
Mutations in Leucine-Rich Repeat protein Kinase 2 (LRRK2) are associated with Parkinson's Disease (PD) and Crohn's Disease (CD), but the regulation of LRRK2 during inflammation remains relatively unexplored. Here we developed a flow cytometry-based assay to assess LRRK2 activity in individual cells ...
ORGANISM(S): Mus musculus (Mouse) 
2025-03-04 | PXD056827 | Pride
Inflammation Lrrk2 Il4 
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