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TranscriptomicsRNA-Seq of bacteriophage S-PM2d infecting Synechococcus spp. WH7803 at high light and low light treatments
The aim of this experiment is to identify genes in the bacteriophage S-PM2d that are deferentially expressed in response to light intensity during infection. We were interested in light since the host (Synechococcus) obtains all energy and carbon for growth from light, through photosynthesis. The am...
ORGANISM(S): Synechococcus phage S-PM2 
2017-08-01 | E-MTAB-5840 | biostudies-arrayexpress
ProteomicsSkin cancer-associated S. aureus downregulates DNA repair mechanisms, and promotes oxidative stress and DNA damage in human keratinocytes
Actinic keratoses (AK) are premalignant lesions common on photo-damaged skin that, over time, can progress to squamous cell carcinoma (SCC). A high bacterial load of Staphylococcus aureus is associated with AK and SCC but it is unknown whether this has a direct impact on skin cancer development. To ...
ORGANISM(S): Staphylococcus Capitis Staphylococcus Aureus Staphylococcus Epidermidis Staphylococcus 
2022-05-17 | PXD031676 | panorama
ProteomicsOptimisation of sporosori purification and protein extraction techniques for the biotrophic protozoan plant pathogen Spongospora subterranea
Spongospora subterranea is a soil-borne plant pathogen responsible for economically significant root and powdery scab diseases of potato. However, Tthe obligate biotrophic nature of S. subterranea has made detailed study of the pathogen problematic. Here, we first compared the benefits of sporosori ...
ORGANISM(S): Spongospora sp. 
2021-09-09 | PXD019776 | Pride
Spongospora subterranea  sporosori  density gradient centrifugation  ludox  proteomics  s-trap. 
TranscriptomicsTranscription profiling of S. cerevisiae to investigate formaldehyde as source of free-energy during growth on glucose
Previously, it has been demonstrated that formate can be utilized by Saccharomyces cerevisiae as additional energy source using cells grown in a glucose-limited chemostat. Here, we investigated utilization of formaldehyde as co-substrate. Since endogenous formaldehyde dehydrogenase activities were i...
ORGANISM(S): Saccharomyces cerevisiae 
2008-10-18 | E-GEOD-8902 | biostudies-arrayexpress
TranscriptomicsTranscriptional landscape of transkingdom communication between Candida albicans and Streptococcus gordonii
Recent studies have shown that the transcriptional landscape of the pleiomorphic fungus Candida albicans is highly dependent upon growth conditions. Here using a dual RNA-seq approach we identified 299 C. albicans and 72 Streptococcus gordonii genes that were either up- or down-regulated specificall...
ORGANISM(S): Candida albicans 
2015-06-22 | E-GEOD-68477 | biostudies-arrayexpress
TranscriptomicsSupervised Lowess normalization of comparative genome hybridization data: application to lactococcal strain comparisons.
Background Array-based comparative genome hybridization (aCGH) is commonly used to determine the genomic content of bacterial strains. In aCGH data, systematic errors are comparable to those occurring in transcriptome data. However, especially for microbes, an additional source of variation exists: ...
ORGANISM(S): Lactococcus lactis subsp. cremoris MG1363 
2008-07-19 | E-GEOD-9039 | biostudies-arrayexpress
MetabolomicsEffect of NAC154 transcription factor overexpression on the field grown poplar stem wood metabolome
Several xylem-associated regulatory genes have been identified that control processes associated with wood formation in poplar. Prominent among these are the NAC domain transcription factors (NACs). We evaluated the putative involvement of Populus NAC154, a co-ortholog of the Arabidopsis gene SND2, ...
2015-01-31 | MTBLS119 | MetaboLights
GenomicsEffect of S. epidermidis phenol-soluble modulins on murine dorsal skin (24h)
Effect of S. epidermidis phenol-soluble modulins on murine dorsal skin (24h)
PRJNA863579 | ENA
TranscriptomicsTranscription profiling of S. cerevisiae TPP 2-oxo acid decarboxylases
The irreversible decarboxylation step, which commits 2-oxo acids to the Ehrlich pathway, was initially attributed to pyruvate decarboxylase. However, the yeast genome was shown to harbour no fewer than 5 genes that show sequence similarity with thiamine-diphosphate dependent decarboxylase genes. Thr...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-16 | E-GEOD-9590 | biostudies-arrayexpress
UnknownIdentification of the remains of King Richard III.
Not available
S-EPMC4268703 | biostudies-literature
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