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ProteomicstRNA-Phe digest and ligation of signal enhancer sample analysis
Mass spectrometry analysis of RNA enables measurement and quantification of modifications with sequence context. Since mass spectrometry sensitivity is limited by poor ionization efficiences of RNA oligonucleotides, we developed a ligation based sample preparation approach to improve ionization of R...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2026-09-16 | PXD076675 | Pride
Lc-msms Rna modifications S. cerevisiae Pytheas 
TranscriptomicsBias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure
High-throughput sequencing (HTS) has become a powerful tool for the detection of and sequence characterization of microRNAs (miRNA) and other small RNAs (sRNA). Unfortunately, the use of HTS data to determine the relative quantity of different miRNAs in a sample has been shown to be inconsistent wi...
ORGANISM(S): synthetic construct 
2015-05-15 | E-GEOD-67053 | biostudies-arrayexpress
UnknownNanopore sequencing of internal 2'-PO4 modifications installed by RNA repair.
Not available
S-EPMC10187680 | biostudies-literature
GenomicsRNA Proximity Ligation to Resolve Intramolecular RNA Structures in situ
RNA Proximity Ligation to Resolve Intramolecular RNA Structures in situ
PRJNA285680 | ENA
ProteomicsChemoproteomic discovery of a human RNA ligase
RNA ligases are present across all forms of life. While enzymatic RNA ligation between 5'-PO4 and 3'-OH termini is prevalent in viruses, fungi, and plants, such RNA ligases are yet to be identified in vertebrates. Here, using a nucleotide-based chemical probe targeting human AMPylated proteome, we h...
ORGANISM(S): Homo sapiens (Human) 
2023-01-27 | PXD038132 | Pride
Rna ligation Ampylation Proteomics Post-translational modification 
UnknownBias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure.
Not available
S-EPMC4420488 | biostudies-literature
UnknownRNAcontacts: A Pipeline for Predicting Contacts from RNA Proximity Ligation Assays
Not available
S-EPMC10154773 | biostudies-literature
UnknownArchaeal RNA ligase from thermoccocus kodakarensis for template dependent ligation.
Not available
S-EPMC5270536 | biostudies-literature
UnknownAssessing long-distance RNA sequence connectivity via RNA-templated DNA-DNA ligation.
Not available
S-EPMC4442144 | biostudies-literature
GenomicsRNA-DNA interactome of a prokaryotic cell uncovered by proximity ligation
RNA-DNA interactome of a prokaryotic cell uncovered by proximity ligation
PRJNA862901 | ENA
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