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TranscriptomicsRNase G complementation of rne null mutation identifies functional interrelationships with RNase E
The Escherichia coli endoribonucleases RNase E (Rne) and RNase G (Rng) have sequence similarity and broadly similar sequence specificity. Whereas the absence of Rne normally is lethal, we show here that E. coli bacteria that lack the rne gene can be made viable by overexpression of Rng. Rng-compleme...
ORGANISM(S): Escherichia coli 
2005-08-13 | E-GEOD-3123 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E. coli mutants lacking the rne gene and over expressing Rng
The Escherichia coli endoribonucleases RNase E (Rne) and RNase G (Rng) have sequence similarity and broadly similar sequence specificity. Whereas the absence of Rne normally is lethal, we show here that E. coli bacteria that lack the rne gene can be made viable by overexpression of Rng. Rng-compleme...
ORGANISM(S): Escherichia coli 
2005-07-11 | E-SMDB-1515 | biostudies-arrayexpress
TranscriptomicsRraA. a protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli
This SuperSeries is composed of the following subset Series: GSE3869: Effects of rraA deletion on transcription GSE3870: Effects of rraA overexpression on transcription Abstract: Ribonuclease E (RNase E) has a key role in mRNA degradation and the processing of catalytic and structural RNAs in E. co...
ORGANISM(S): Escherichia coli 
2006-03-07 | E-GEOD-4383 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E. coli overexpressing rraA, a protein inhibitor of RNase E
Effects of rraA overexpression on the global transcript profile of E. coli. This experiment set contains primary data for Figure 5A.
ORGANISM(S): Escherichia coli 
2005-10-13 | E-SMDB-2258 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E. coli with rraA deletion, a protein inhibitor of RNase E
Effects of rraA deletion on the global transcript profile of E. coli. This experiment set contains primary data for Figure 5B.
ORGANISM(S): Escherichia coli 
2005-10-13 | E-SMDB-2257 | biostudies-arrayexpress
ProteomicsProteomic profiling of RNase III-dependent asRNA regulation in E. coli
In an effort to determine if the RNase III-dependent asRNA regulation had an effect on protein production in E. coli we conducted two TMT 6-plex experiments comparing cultures of wildtype E. coli, rnc-14, rnc-38, hfq in the stationary and exponential phase.
ORGANISM(S): Escherichia coli 
2020-06-18 | PXD011180 | Pride
E. coli Antisense rnas Rnase iii 
GenomicsRapZ -- RNase E
Adaptor protein RapZ activates endoribonuclease RNase E by protein-protein interaction to cleave a small regulatory RNA
PRJEB35302 | ENA
TranscriptomicsTranscriptome of Sinorhizobium meliloti RNase mutants
The ribonucleases (RNases) E and J are essential in Escherichia coli and Bacillus subtilis, respectively. Sinorhizobium meliloti contains both, the rne gene encoding RNase E and the rnj gene encoding RNase J. The transcriptomes of the S. meliloti Rm2011 wild type, and rne and rnj mutants were compar...
ORGANISM(S): Sinorhizobium meliloti 
2017-01-21 | E-MTAB-5435 | biostudies-arrayexpress
GenomicsExpression of E. coli RNase toxins
Expression of E. coli RNase toxins
PRJNA602534 | ENA
ProteomicsMinD-RNase E interplay controls localization of polar mRNAs in E. coli
We have recently shown that the polar transcriptome of E. coli is unique compared to the membrane and cytosolic ones. Several factors were suggested to mediate mRNA localization to the membrane, but the mechanism of localizing mRNAs to the poles is not known. We combined a candidate system approach ...
ORGANISM(S): Escherichia coli 
2023-12-17 | PXD044814 | Pride
Lc-ms/ms Proteomics E coli Rna localization 
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