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TranscriptomicsRNAseq and Lariat sequencing of different S. pombe growth conditions
We performed lariat sequencing to profile the diversity of spliced RNA lariats in S. pombe identify annotated and alternate introns. Three different growth conditions were used to grow S. pombe wt and S. pombe Δdbr1. Lariat sequencing of the Δdbr1 strains and RNAseq of the wt and Δdbr1 strains were ...
ORGANISM(S): Schizosaccharomyces pombe 
2015-09-03 | E-GEOD-68345 | biostudies-arrayexpress
TranscriptomicsEarly transcriptional events linked to induction of diapause revealed by RNAseq in larvae of drosophilid fly, Chymomyza costata.
Diapause is an environmentally programmed and hormonally regulated period of dormancy which makes an important part of the life-cycle in many species of invertebrates. In this study, using a RNAseq approach, we focused on very early stages of diapause induction in the larvae of drosophilid fly, Chym...
ORGANISM(S): Chymomyza costata 
2015-08-03 | E-MTAB-3620 | biostudies-arrayexpress
TranscriptomicsNext Generation Sequencing (RNAseq) of non-small cell lung cancer
Cancer testis antigens (CTAs) are of clinical interest as biomarkers and present valuable targets for immunotherapy. To comprehensively characterize the CTA landscape of non-small cell lung cancer (NSCLC), we compared RNAseq data of 199 NSCLC tissues to the normal transcriptome of 142 samples from 3...
ORGANISM(S): Homo sapiens 
2016-06-01 | E-GEOD-81089 | biostudies-arrayexpress
UnknownT-RHEX-RNAseq - a tagmentation-based, rRNA blocked, random hexamer primed RNAseq method for generating stranded RNAseq libraries directly from very low numbers of lysed cells.
Not available
S-EPMC10111750 | biostudies-literature
UnknownBISR-RNAseq: an efficient and scalable RNAseq analysis workflow with interactive report generation.
Not available
S-EPMC6923898 | biostudies-literature
TranscriptomicsOccupancy and transcriptional profile of Prdm12 in posteriorized neural tissue
V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their specification are poorly understood. Morphological and molecular evidence suggest that the zinc finger transcription factor Prdm12 may play a role in pro...
ORGANISM(S): Xenopus laevis 
2015-11-04 | E-GEOD-64551 | biostudies-arrayexpress
TranscriptomicsRNAseq changes in pre MAPKi treatment and post MAPKi resistance Melanomas
Melanoma resistance to MAPK- or T cell checkpoint-targeted therapies represents a major clinical challenge, and treatment failures of MAPK-targeted therapies due to acquired resistance often require salvage immunotherapies. We show that genomic analysis of acquired resistance to MAPK inhibitors reve...
ORGANISM(S): Homo sapiens 
2015-09-15 | E-GEOD-65185 | biostudies-arrayexpress
UnknownGlobal FDR control across multiple RNAseq experiments.
Not available
S-EPMC9805573 | biostudies-literature
GenomicsYap RNAseq
Yap RNAseq
PRJNA609705 | ENA
TranscriptomicsRNAseq Replicate experiments from PD38 and PD79 IMR90s
RNAseq replicate in Proliferating and Senescent IMR90s We used RNAseq to examine RNA levels in human IMR90 replicative senescence (RS)
ORGANISM(S): Homo sapiens 
2014-12-15 | E-GEOD-53330 | biostudies-arrayexpress
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