Roger G G - OmicsDI

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Unknown (529)
Transcriptomics (86)
Genomics (50)
Proteomics (49)
Metabolomics (15)
Models (6)
Genomic (1)

Organisms

Homo sapiens (106)
Mus musculus (20)
Bacillus cereus (5)
Saccharomyces cerevisiae (4)
Mycobacterium tuberculosis (4)
Rattus norvegicus (3)
Brassica napus (3)
Hordeum vulgare (3)
Bos taurus (3)
Escherichia coli (3)
Staphylococcus aureus (3)
Aspergillus niger (2)
Aggregatibacter actinomycetemcomitans (2)
Arabidopsis thaliana (2)
Streptococcus suis P1/7 (1)
Megaphorura arctica (1)
Synechocystis sp. PCC 6803 (1)
Leptidea sinapis (1)
Macaca fascicularis (1)
Schistosoma mansoni (1)
Zea mays (1)
Oncorhynchus mykiss (1)
Acinetobacter baumannii (1)
Drosophila melanogaster (1)
Cyanobacteriota (1)
Alteromonas macleodii ATCC 27126 (1)
Arcobacter (1)
Bacteria (1)
Bifidobacterium longum subsp. longum (1)
Breviatea (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (94)
EGA (41)
pride (37)
MetaboLights (11)
BioModels (6)
MassIVE (6)
GNPS (4)
PanoramaPublic (2)
PeptideAtlas (2)
dbGaP (1)
jPOST (1)
PAXDB (1)
ENA (1)

Tissue

Cell culture (7)
Epithelial cell (5)
Blood plasma (3)
Blood (2)
Early embryonic cell (2)
Kidney (2)
Liver (2)
Permanent cell line cell (2)
Retina (2)
T cell (2)
Others (1)
Brain (1)
Cell suspension culture (1)
Embryonic stem cell (1)
Macrophage (1)
Mammary gland (1)
Monocyte (1)
Motor neuron (1)
Natural killer cell (1)
Plant cell (1)
Pulmonary artery endothelial cell (1)
Skeletal muscle fiber (1)
Testis (1)

Disease

Breast cancer (4)
Acute myeloid leukemia (2)
Leber congenital amaurosis (2)
Heart disease (1)
Unspecified peripheral T-cell lymphoma (1)
Age related macular degeneration (1)
Amyotrophic lateral sclerosis (1)
Breast adenocarcinoma (1)
Disease free (1)
Giardiasis (1)
Primary pulmonary hypertension (1)
Prostate adenocarcinoma (1)
Type 1 diabetes mellitus (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (37)
Shotgun proteomics (22)
Mass spectrometry (8)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (4)
Data-independent acquisition (4)
Mass spectrometry assay (3)
Gel-based experiment (3)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (7)
Liquid Chromatography MS - negative - reverse phase (5)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiSeq 2000 (2)
LTQ FT (2)
MaXis (2)
Q Exactive Plus (2)
Liquid Chromatography MS - negative - hilic (2)
TripleTOF 5600 (AB Sciex) (2)
Qiagen (1)
TruSeq Stranded mRNA Sample Preparation Kit (Illumina) (1)
Illumina Genome Analyzer IIx (1)
NanoDrop (1)
Bellco roll-in incubator (1)
G2565BA DNA microarray scanner [Agilent] (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
LCQ Classic (1)
Orbitrap Astral (1)
LTQ Orbitrap Velos (1)
Orbitrap Exploris 240 (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive HF-X (1)
6490 Triple Quadrupole LC/MS (Agilent) (1)
Bruker (1)
Diode array detection MS - alternating - reverse phase (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)

Publication Date

2021 (13)
2010 (13)
2023 (12)
2015 (12)
2012 (12)
2024 (9)
2025 (9)
2014 (9)
2011 (9)
2008 (8)
2022 (7)
2020 (7)
2016 (7)
2013 (7)
2007 (6)
2005 (5)
2009 (5)
2017 (2)
2026 (2)
2018 (2)
2003 (2)
2019 (2)
2006 (1)
2004 (1)

UNIPROT ID/AC

A5YWB0 (1)
O13525 (1)
P00044 (1)
P00045 (1)
P00127 (1)
P00128 (1)
P00163 (1)
P00175 (1)
P00330 (1)
P00331 (1)
P00358 (1)
P00359 (1)
P00360 (1)
P00401 (1)
P00410 (1)
P00420 (1)
P00424 (1)
P00425 (1)
P00427 (1)
P00431 (1)
P00498 (1)
P00549 (1)
P00560 (1)
P00572 (1)
P00635 (1)
P00724 (1)
P00812 (1)
P00815 (1)
P00817 (1)
P00830 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000247315 (1)

CHEBI ID

CHEBI:15422 (2)
CHEBI:15996 (2)
CHEBI:17489 (2)
CHEBI:17552 (2)
CHEBI:10723 (1)
CHEBI:1109 (1)
CHEBI:11851 (1)
CHEBI:12071 (1)
CHEBI:12936 (1)
CHEBI:12952 (1)
CHEBI:13086 (1)
CHEBI:13705 (1)
CHEBI:15343 (1)
CHEBI:15345 (1)
CHEBI:15346 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)
CHEBI:15361 (1)
CHEBI:15377 (1)
CHEBI:15379 (1)
CHEBI:15380 (1)
CHEBI:15414 (1)
CHEBI:15428 (1)
CHEBI:15430 (1)
CHEBI:15435 (1)
CHEBI:15437 (1)
CHEBI:15439 (1)
CHEBI:15440 (1)
CHEBI:15441 (1)
CHEBI:15467 (1)

Metabolite Name

Citric acid (3)
Cholic acid (2)
Deoxycholic acid (2)
Deoxyuridine (2)
Glutamine (2)
Indoxyl sulfate (2)
L-Glutamic acid (2)
L-Histidine (2)
L-Leucine (2)
L-Tyrosine (2)
Mesaconic acid (2)
Methionine (2)
N-Acetyl-L-glutamic acid (2)
Orotic acid (2)
PE 26:0 (2)
PE 26:1 (2)
PE 34:1 (2)
PE 38:3 (2)
PE 38:6 (2)
PE 40:3 (2)
PE 40:6 (2)
PE 42:5 (2)
PG 36:3 (2)
Phenylacetic acid (2)
Sarcosine (2)
Sebacic acid (2)
Shikimic acid (2)
Taurine (2)
Tryptophan (2)
Tyrosine (2)

First Public Date

2026 (1)

Modelling Approach

Ordinary differential equation model (5)

Lab affiliation

Department of Clinical Microbiology, Sahlgrenska University Hospital, Gothenburg, Sweden (3)
Proteomic Plateform Necker - SFR Necker - US24 (2)
Bioaster (1)
Cancer Program, Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Melbourne, VIC, 3800, Australia (1)
Cancer Program, Monash Biomedicine Discovery Institute, Clayton, VIC 3800, Australia. Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC 3800, Australia. (1)
Children's Medical Research Institute (1)
Department of Cancer Biology, University of Pennsylvania (1)
Department of Chemistry and Molecular Biology, University of Gothenburg, Sweden (1)
Department of Infection Diseases, Institute of Biomedicine,Sahlgrenska Academy of the University of Gothenburg (1)
Department of Infectious Diseases, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, 40530 Gothenburg, Sweden. Department of Clinical Microbiology, Sahlgrenska University Hospital, Region Västra Götaland, 41345 Gothenburg, Sweden. (1)
Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, 9052 Ghent, Belgium (1)
Head of the Necker Proteomics Faculty of Medecine, University Paris Cité SFR Necker INSERM US24 160 rue de Vaugirard | 75015 Paris Tél. 01 40 61 54 67 (1)
Head, Department of Biochemistry and Molecular Biology Head, Signalling Network Laboratory Head, Biomedicine Discovery Institute Cancer Program Department of Biochemistry and Molecular Biology Monash University Level 1, Building 77, Clayton Campus 23 Innovation Walk Clayton VIC 3800 Australia (1)
Institute for Research in Biomedicine (IRB), Università della Svizzera italiana, Bellinzona, Switzerland (1)
Institute for Research in Biomedicine, Baldiri i Reixac 10, Barcelona 08028, Spain (1)
Institute for Research in Biomedicine, Università della Svizzera italiana, Bellinzona, Switzerland. Institute of Oncology Research, Università della Svizzera italiana, Bellinzona, Switzerland. (1)
Institute for Research in Biomedicine, Università della Svizzera italiana, Switzerland (1)
Laboratory of Mass Spectrometry BIOCEV Faculty of Science Charles University in Prague Průmyslová 595, 252 42 Vestec, Tel +420325873925 http://www.biocev.eu/corefacilit/omics/ (1)
Max F.Perutz Laboratories (MFPL), University of Vienna; MFPL Mass Spectrometry Facility (1)
Monash Biomedicine Discovery Institute Department of Biochemistry and Molecular Biology Monash University (1)
Monash Biomedicine Discovery Institute Department of Biochemistry and Molecular Biology Monash University Level 1, Building 77, Clayton Campus 23 Innovation Walk Clayton VIC 3800 Australia (1)
Necker Proteomics, Université Paris Cité - Structure Fédérative de Recherche Necker, INSERM US24/CNRS UAR3633, Paris, France. (1)
Norwegian University of Life Sciences, Aas, Norway (1)
Novartis Biomedical Research, Cambridge, MA, USA (1)
PhD, Consultant at Nanoxis Consulting AB, Gothenburg, Sweden (1)
Platform Proteomic Necker Faculty of Medecine, University Paris Cité SFR Necker INSERM US24 (1)
Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA. (1)
Proteomic Platform of Institut de Microbiologie de la Mediterranee CNRS FR 3479 Marseille Proteomique (1)
Proteomics platform Necker, Université Paris Cité - Structure Fédérative de Recherche Necker, INSERM US24/CNRS UAR3633, Paris 75015, France. (1)
Proteomics platform Necker, Université de Paris - Structure Fédérative de Recherche Necker, INSERM US24/CNRS UMS3633, Paris 75015, France (1)

IsPrivate

False (6)

Model Flag

Non Kinetic (1)

Study type

Transcription profiling by array (62)
RNA-seq of coding RNA (9)
ChIP-seq (8)
Comparative genomic hybridization by array (4)
RNA-seq of coding RNA from single cells (3)
MicroRNA profiling by array (2)
Methylation profiling by array (2)
Unknown experiment type (1)
ATAC-seq (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (60)
2022 (58)
2023 (57)
2024 (51)
2019 (44)
2025 (43)
2020 (35)
2015 (35)
2017 (31)
2012 (29)
2018 (26)
2016 (24)
2014 (24)
2011 (21)
2013 (17)
2010 (17)
2009 (13)
2008 (12)
2007 (9)
2026 (6)
2006 (3)
2003 (2)
2004 (1)
2005 (1)
2002 (1)
2001 (1)
1999 (1)
1998 (1)

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Total syntheses of isodomoic acids G and H.

Not available

S-EPMC2760019 | biostudies-literature

HLA-G Alleles Impact the Perinatal Father-Child HPV Transmission.

Not available

S-EPMC10378566 | biostudies-literature

Selenium toxicity but not deficient or super-nutritional selenium status vastly alters the transcriptome in rodents

Protein and mRNA levels for several selenoproteins, such as glutathione peroxidase-1 (Gpx1), are down-regulated dramatically by selenium (Se) deficiency. Selenoprotein levels in rats increase sigmoidally with increasing dietary Se and reach defined plateaus at the Se requirement, making them sensiti...

ORGANISM(S): Rattus norvegicus

2011-01-19 | E-GEOD-23895 | biostudies-arrayexpress

Stereocontrolled total syntheses of isodomoic acids G and H via a unified strategy.

Not available

S-EPMC3076050 | biostudies-literature

Implications of the polymorphism of HLA-G on its function, regulation, evolution and disease association.

Not available

S-EPMC3021195 | biostudies-literature

IL28B expression depends on a novel TT/-G polymorphism which improves HCV clearance prediction.

Not available

S-EPMC3674704 | biostudies-literature

Human Leukocyte Antigen G Polymorphism and Expression Are Associated with an Increased Risk of Non-Small-Cell Lung Cancer and Advanced Disease Stage.