Rogers A A - OmicsDI

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Unknown (6841)
Transcriptomics (106)
Proteomics (81)
Genomics (43)
Models (22)
Metabolomics (22)
Other (6)
Multiomics (6)
Clinical (1)

Organisms

Homo sapiens (45)
Mus musculus (29)
Candida albicans (10)
Caenorhabditis elegans (4)
Schizosaccharomyces pombe (4)
Saccharomyces cerevisiae (3)
Rattus norvegicus (3)
Coregonus clupeaformis (2)
Daphnia magna (2)
Enterococcus faecium (2)
Anopheles gambiae (2)
Escherichia coli (2)
Drosophila melanogaster (2)
Arabidopsis thaliana (2)
Populus tremuloides (2)
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (1)
Cercocebus atys (1)
Schistocerca gregaria (1)
Populus x canadensis (1)
Arachis hypogaea (1)
Zymomonas mobilis (1)
unidentified (1)
Cyprinus carpio (1)
Aspergillus fumigatus (1)
Medicago truncatula (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Hordeum vulgare (1)
Vibrio cholerae (1)
Mycobacterium tuberculosis H37Rv (1)
Escherichia coli K-12 (1)

Organisms

Candida albicans (7)
Mus musculus (7)
Nakaseomyces glabratus (2)
Homo sapiens (2)
Populus tremuloides (1)
Lodderomyces parapsilosis (1)
Mesocricetus auratus (1)
Candidozyma auris (1)
Schizosaccharomyces pombe (1)
Rattus norvegicus (1)
human gut metagenome (1)

Repository

biostudies-arrayexpress (102)
pride (69)
ENA (26)
BioModels (17)
MetaboLights (17)
EGA (16)
geo (10)
MassIVE (10)
Cell Collective (5)
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jPOST (1)

Tissue

Cell culture (22)
Blood (5)
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Blood cell (3)
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Others (2)
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Aortic valve (1)
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Breast adenocarcinoma cell line (1)
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Culture medium (1)
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Hemolymph (1)

Disease

Disease free (4)
Cardiovascular system disease (3)
Plasmodium falciparum malaria (2)
Papillary renal cell carcinoma (1)
Colorectal Neoplasms (1)
Not Available (1)
Acute leukemia (1)
Autoimmune disease (1)
Bone cancer (1)
Bone disease (1)
COVID-19 (1)
Cervix carcinoma (1)
Chronic myeloid leukemia (1)
Leptospirosis (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (69)
Shotgun proteomics (40)
Mass spectrometry (15)
Bottom-up proteomics (9)
Gel-based experiment (9)
Top-down proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (3)
Data-independent acquisition (3)
Illumina OmniQuad 2.5 - CNVpartition (1)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
SRM/MRM (1)

Instrument Platform

Q Exactive (8)
Liquid Chromatography MS - positive - reverse phase (5)
Orbitrap Fusion Lumos (3)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (3)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
LTQ Orbitrap Velos (3)
Illumina NovaSeq 6000 (2)
NextSeq 500 (2)
Liquid Chromatography MS - alternating - hilic (2)
MA900, Sony (1)
10x Chromium Controller (1)
Illumina Genome Analyzer (1)
GenePix Professional 4200A [Axon Instruments] (1)
GenePix 4000A [Axon Instruments] (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
Instrument (1)
Impact II (1)
MaXis (1)
NanoACQUITY UPLC (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
QExactive HFX (1)
SolariX (1)
Orbitrap Fusion (Thermo Fisher Scientific)_negative (1)
Orbitrap Fusion (Thermo Fisher Scientific) (1)
Bruker (1)
Liquid Chromatography MS - positive (1)

Publication Date

2022 (28)
2014 (27)
2023 (21)
2011 (13)
2021 (13)
2010 (12)
2008 (12)
2019 (11)
2013 (11)
2025 (11)
2026 (10)
2024 (10)
2012 (10)
2020 (8)
2017 (7)
2016 (6)
2015 (6)
2009 (6)
2018 (4)
2007 (3)
2006 (3)
2005 (2)

UNIPROT ID/AC

A0A024R563 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A0A0MR66 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0MZ66 (2)
A1L170 (2)
A1X283 (2)
A3KN83 (2)
A5A3E0 (2)
A5YM69 (2)
A6NFI3 (2)
A6NMQ1 (2)
A7E2V4 (2)
A8CG34 (2)
A8MQ03 (2)
A9IYQ1 (2)
B3KML9 (2)
B4DKM5 (2)
B4DPR2 (2)
B4DRV9 (2)
B4DY08 (2)
B4E3A4 (2)
B4E3H1 (2)
B5MBZ0 (2)
B5MCI0 (2)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)
ENSMUSP00000069525 (1)
ENSMUSP00000140201 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:16708 (6)
CHEBI:15741 (6)
CHEBI:16870 (5)
CHEBI:32816 (5)
CHEBI:16027 (5)
CHEBI:15354 (5)
CHEBI:30769 (5)
CHEBI:18050 (4)
CHEBI:30797 (4)
CHEBI:16235 (4)
CHEBI:30915 (4)
CHEBI:15422 (4)
CHEBI:16761 (4)
CHEBI:17368 (4)
CHEBI:173703 (3)
CHEBI:35038 (3)
CHEBI:28013 (3)
CHEBI:6359 (3)
CHEBI:34687 (3)
CHEBI:17992 (3)
CHEBI:17981 (3)
CHEBI:16811 (3)
CHEBI:16742 (3)
CHEBI:15699 (3)
CHEBI:48928 (3)
CHEBI:15824 (3)
CHEBI:16610 (3)
CHEBI:4167 (3)
CHEBI:16359 (3)
CHEBI:16704 (3)

Metabolite Name

Sn-glycero-3-Phosphocholine (3)
Tris(2-butoxyethyl) phosphate (3)
2,6-Di-tert-butyl-4-hydroxymethylphenol (3)
Succinate (3)
AMP (3)
Elaidic acid (3)
Cholic acid (3)
Glucose 6-phosphate (3)
Spermidine (3)
Guanine (3)
L-Glutamine (3)
Adenine (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
Dibutyl phthalate (DBP) (2)
Lyso-PC(16:0) (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
N2-Acetyl-L-lysine (2)
N-Acetylneuraminate (2)
L-2-Aminoadipate (2)
D-Threose (2)
D-Galacturonate (2)
2-Deoxy-D-glucose (2)
D-Fructose (2)
Aspartyl-L-proline (2)
Lactulose (2)
Picolinic acid (2)
Glycine (2)
N-Acetylglutamine (2)

First Public Date

2014 (12)
2025 (4)
2023 (2)
2021 (2)
2018 (2)
2026 (1)
2019 (1)
2017 (1)
2013 (1)

Modelling Approach

Other (16)
Computational model (1)

Study status

Completed (1)

Lab affiliation

Department of Cell Biology, Harvard Medical School, Boston, MA, USA (3)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK (3)
Centre for Blood Research, Dept. Oral Biological Sciences, Faculty of Dentistry, University of British Columbia, Canada (2)
Centre for Blood Research, University of British Columbia (2)
Foetal Exposure Group School of Clinical Sciences University of Bristol United Kingdom (2)
Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore (2)
-The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, Victoria 3052, Australia. -Department of Medical Biology, University of Melbourne, Parkville, Victoria 3010, Australia. (1)
ANZAC Research Institute, The University of Sydney (1)
Beth Israel Deaconess Medical Center, Harvard Medical School Boston MA 02215 United States (1)
Brigham and Women's Hospital (1)
Brigham and Women's Hospital and Harvard Medical School (1)
Centre for Blood Research, Dept. of Oral Biological and Medical Sciences, Faculty of Dentistry, University of British Columbia (1)
Centre for High-throughput Biology, University of British Columbia, Vancouver, British Columbia,Canada, V6T 1Z4 (1)
Centre for Medicines Discovery & Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK (1)
Chief Scientific Officer, Pelago Bioscience AB (1)
Chief Scientific Offiser, Pelago Bioscience AB (1)
Children's Medical Research Institute, Westmead, NSW (1)
Children's Medical Research Institute, Westmead, NSW, Australia (1)
Department of Biochemistry and Molecular Biology Oklahoma State University Stillwater, OK 74078 USA (1)
Department of Chemistry, Stanford University Stanford ChEM-H (1)
Department of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, NC (1)
Department of Entomology and Plant Pathology, 127 Noble Research Center, Oklahoma State University, Stillwater, Oklahoma, USA, 74078 (1)
Department of Genome Sciences, University of Washington, USA (1)
Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, 185 Meeting St., Providence, Rhode Island 02912, USA (1)
Department of Physiology, University of Toronto Ted Rogers Centre for Heart Research Toronto, Ontario, Canada (1)
Department of Translational Hematology and Oncology Research, Taussig Cancer Institute, Cleveland Clinic, Cleveland, OH, USA (1)
Dept of Chemistry, University of Illinois at Urbana-Champaign (1)
Deputy Director – Science Strategy The Walter and Eliza Hall institute of Medical Research Professor, Department of Medical Biology Faculty of Medicine, Dentistry and Health The University of Melbourne Australia (1)
Director UAB Proteomics Facility, Professor UAB Anesthesiology (1)
Division of Pediatric Cardiology, Department of Pediatrics, Emory University School of Medicine, Atlanta, Georgia, 30322, USA (1)

IsPrivate

False (17)

Submitter Keywords

Machine Learning Model (17)
FAIR-AIML (1)

Classification

fungi (11)

Study type

Transcription profiling by array (75)
RNA-seq of coding RNA (6)
Transcription profiling by RT-PCR (4)
RNA-seq of coding RNA from single cells (3)
Unknown experiment type (2)
Comparative genomic hybridization by array (2)
ChIP-chip by tiling array (1)
Human - One-color microarray (1)
ChIP-chip by array (1)
Genotyping by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
ChIP-seq (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)
Interventional (1)

Release Date

2022 (720)
2021 (718)
2023 (639)
2025 (636)
2024 (596)
2020 (579)
2019 (430)
2018 (416)
2017 (350)
2016 (297)
2015 (277)
2014 (248)
2013 (180)
2012 (158)
2011 (148)
2010 (104)
2026 (90)
2009 (88)
2008 (86)
2007 (46)
2006 (34)
2005 (21)
2004 (20)
2003 (14)
2001 (13)
2000 (12)
2002 (9)
1999 (7)
1998 (4)
1997 (3)

Location

United States (1)

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A conserved metabolic signature associated with response to fast-acting antimalarial agents

Characterizing the mode of action of antimalarial compounds that emerge from high-throughput phenotypic screens is central to understanding how parasite resistance to these drugs can emerge. Here, we have employed untargeted metabolomics to inform on the mechanism of action of antimalarial leads ...

2023-09-27 | MTBLS6580 | MetaboLights

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial A - seaweed-dose response)

Testing the effect of blue mussel ensilage as a novel cost-efficient protein feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial A, an alternative marin...

2023-06-13 | MTBLS4381 | MetaboLights

Promoting Integrated Care through a Global Treatment Budget: A Qualitative Study in German Mental Health Care using Rogers' Diffusion of Innovation Theory.

Not available

S-EPMC8663745 | biostudies-literature

Semaglutide reduces cardiovascular events regardless of metformin use: a post hoc subgroup analysis of SUSTAIN 6 and PIONEER 6.

Not available

S-EPMC9052629 | biostudies-literature

Coleoid cephalopod sequencing data from Rogers et al. (2026)

PRJNA1450934 | ENA

Understanding the Will Rogers Phenomenon in Cholangiocarcinoma Research and Beyond.

Not available

S-EPMC12523421 | biostudies-literature

2-week-old Arabidopsis seedlings (Columbia ecotype)

Comparison of TopHat alignments and assessment of spurious splice junctions for 32nt and 76nt read lengths. Total RNA from 2-week-old Arabidopsis thaliana (ecotype Columbia) seedlings grown on MS plates was isolated using RNeasy Plant Mini Kit from Qiagen. To remove any contaminating DNA, RNA was t...

ORGANISM(S): Arabidopsis thaliana

2011-09-24 | E-GEOD-32318 | biostudies-arrayexpress

Effects of semaglutide on risk of cardiovascular events across a continuum of cardiovascular risk: combined post hoc analysis of the SUSTAIN and PIONEER trials.

Not available

S-EPMC7526237 | biostudies-literature

Arabidopsis plants exposed to combined heat and drought stress

One of the eminent opportunities afforded by modern genomic technologies is the potential to provide a mechanistic understanding of the processes by which genetic change translates to phenotypic variation and the resultant appearance of distinct physiological traits. Indeed much progress has been m...

ORGANISM(S): Arabidopsis thaliana

2010-05-26 | E-GEOD-9415 | biostudies-arrayexpress

The absence of a Ca(2+) signal during mouse egg activation can affect development and gene expression patterns

The absence of a Ca(2+) signal during mouse egg activation can affect parthenogenetic preimplantation development, gene expression patterns, and blastocyst quality. Gene expression pattern of parthenogenetic mouse embryos by cycloheximide or Sr2+. Keywords: development or differentiation design Gene...

ORGANISM(S): Mus musculus

2010-06-10 | E-GEOD-5077 | biostudies-arrayexpress

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7124 Results

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