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TranscriptomicsMore than the sum of their parts: Metabolic crossfeeding and interkingdom communication in dual-species biofilms of Streptococcus mutans and Candida albicans
Polymicrobial biofilms are of large medical importance, but little is known about their physiology and the underlying interspecies interactions. Here we studied two human pathogens, the opportunistic fungus Candida albicans and the caries promoting bacterium Streptococcus mutans. Both species formed...
ORGANISM(S): Candida albicans 
2014-09-01 | E-GEOD-52543 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human Caco-2 cells cocultured with E.coli Nissle 1917
Confluent Caco-2 cells cultured over 6 hours non-treated with E.coli Nissle 1917; (GSM40938 and GSM40941). Confluent Caco-2 cells cocultured over 6 hours with E.coli Nissle 1917 (GSM40881 and GSM40937).
ORGANISM(S): Homo sapiens 
2008-06-12 | E-GEOD-2232 | biostudies-arrayexpress
TranscriptomicsCell-density resolved comparative analysis of D. shibae wild-type vs. delta-luxI1 overexpressing luxI1 in trans
D. shibae delta-luxI1 overexpressing the luxI1 gene in trans was compared to the wild-type in order to identify quorum sensing controlled traits in this organism. Samples were taken at different optical densities in the exponential phase and in the stationary phase. Samples from Dinoroseobacter shib...
ORGANISM(S): Dinoroseobacter shibae DFL 12 
2012-11-03 | E-GEOD-42012 | biostudies-arrayexpress
TranscriptomicsCell-density resolved comparative analysis of D. shibae wild-type vs. delta-luxI1
A quorum sensing null mutant was compared with D. shibae wild-type in order to identify quorum sensing controlled traits in this organism. Samples were taken at different optical densities in the exponential phase and in the stationary phase in order to clarify if quorum sensing regulation is depend...
ORGANISM(S): Dinoroseobacter shibae DFL 12 
2012-11-03 | E-GEOD-42011 | biostudies-arrayexpress
TranscriptomicsComparative analysis of D. shibae wild-type vs. delta-luxI1 supplemented with different acetylated homoserine-lactones
Comparison of a quorum sensing null mutant supplemented with C18-HSL, C18en-HSL, C18dien-HSL with D. shibae wild-type in order to identify traits induced by distinct autoinducers in this organism. Loop-design, two to three biological replicates of D. shibae wild-type, delta-luxI1 and delta-luxI1 sup...
ORGANISM(S): Dinoroseobacter shibae DFL 12 
2012-11-03 | E-GEOD-42010 | biostudies-arrayexpress
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