Romero M M - OmicsDI

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Unknown (4849)
Proteomics (144)
Transcriptomics (134)
Metabolomics (14)
Genomics (13)

Organisms

Homo sapiens (126)
Mus musculus (46)
Arabidopsis thaliana (24)
Rattus norvegicus (10)
Saccharomyces cerevisiae (9)
Vibrio cholerae (6)
Nicotiana tabacum (4)
Quercus ilex (4)
Salmonella enterica subsp. enterica (2)
Caulobacter vibrioides (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (2)
Equus caballus (2)
Vitis vinifera (2)
Oryza sativa Japonica Group (2)
Drosophila melanogaster (2)
Canis lupus familiaris (2)
Oryza sativa (2)
Rhizobium etli (1)
Scophthalmus maximus (1)
Streptococcus pneumoniae TIGR4 (1)
Mustela putorius furo (1)
Aspergillus nidulans (1)
Pan troglodytes (1)
Escherichia coli BW25113 (1)
Hordeum vulgare (1)
Brachypodium distachyon (1)
Escherichia coli K-12 (1)
Sus scrofa (1)
Danio rerio (1)
Fusarium sinicum (1)

Repository

biostudies-arrayexpress (140)
pride (116)
PeptideAtlas (17)
MetaboLights (14)
MassIVE (7)
EGA (5)
jPOST (2)
ENA (2)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (23)
Others (17)
Brain (8)
Plant cell (8)
Epithelial cell (6)
Leaf (6)
Root (6)
Melanocyte (4)
Skin (3)
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Primary cell (2)
T cell (2)
Articular cartilage (1)
B cell (1)
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Bile (1)
Blood (1)
Bone marrow (1)
Breast (1)
CCD-18Co cell (1)
JURKAT cell (1)
MCF-7 cell (1)
RAMOS cell (1)

Disease

Melanoma (6)
Breast cancer (4)
Osteoarthritis (3)
Recessive dystrophic epidermolysis bullosa (2)
Large cell carcinoma (1)
Lung large cell carcinoma (1)
Nevus (1)
Abdominal obesity-metabolic syndrome (1)
Alport syndrome (1)
Amyotrophic lateral sclerosis (1)
Arthritis (1)
Brain cancer (1)
Breast ductal adenoma (1)
COVID-19 (1)
Cholangiocarcinoma (1)
Colon cancer (1)
Coronavirus infectious disease (1)
Cutaneous malignant melanoma 1 (1)
Desmoplastic small round cell tumor (1)
Disease free (1)
Fatty liver disease (1)
Hypertension (1)
Idiopathic pulmonary fibrosis (1)
Lymphoma (1)
Malignant peripheral nerve sheath tumor (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Pancreas adenocarcinoma (1)
Papillary renal cell carcinoma (1)
Pheochromocytoma (1)
Prostate cancer (1)

Technology Type

Mass Spectrometry (116)
Shotgun proteomics (61)
Affinity purification coupled with mass spectrometry proteomics (15)
Bottom-up proteomics (15)
Mass spectrometry (12)
Gel-based experiment (9)
SWATH MS (8)
Data-independent acquisition (7)
Top-down proteomics (6)
Data-dependent acquisition (3)
HDMSE (3)
Mass spectrometry imaging (3)
All-ion fragmentation (2)
MSE (2)
Mass spectrometry assay (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (15)
LTQ Orbitrap Velos (8)
Liquid Chromatography MS - positive - reverse phase (7)
TripleTOF 5600 (6)
NextSeq 500 (5)
Liquid Chromatography MS - negative - reverse phase (5)
Illumina HiSeq 3000 (4)
Liquid Chromatography MS - positive - hilic (4)
LTQ Orbitrap XL (4)
Illumina HiSeq 2000 (3)
MS:1000419 (3)
Liquid Chromatography MS - negative - hilic (3)
LTQ Orbitrap (2)
MS:1000031 (2)
MS:1000044 (2)
Gas Chromatography MS - positive (2)
BrukerDaltonics amaZon ion trap (2)
DNBSEQ-G400 (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)
Orbitrap Eclipse (1)
TimsTOF HT (1)
Bruker (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Q Exactive (1)
QExactive (1)

Publication Date

2014 (35)
2023 (30)
2021 (26)
2013 (23)
2022 (22)
2024 (19)
2019 (19)
2012 (17)
2026 (15)
2016 (15)
2010 (15)
2025 (15)
2015 (9)
2011 (8)
2020 (7)
2018 (4)
2009 (4)
2006 (4)
2017 (4)
2008 (3)
2005 (2)
2007 (1)

UNIPROT ID/AC

1433B_HUMAN (1)
1433E_HUMAN (1)
1433F_HUMAN (1)
1433G_HUMAN (1)
1433S_HUMAN (1)
1433T_HUMAN (1)
1433Z_HUMAN (1)
2AAA_HUMAN (1)
2AAB_HUMAN (1)
2ABA_HUMAN (1)
2ABB_HUMAN (1)
2ABD_HUMAN (1)
3HIDH_HUMAN (1)
5NTC_HUMAN (1)
6PGD_HUMAN (1)
6PGL_HUMAN (1)
9606.ENSP00000291295 (1)
9606.ENSP00000322421 (1)
9606.ENSP00000347168 (1)
9606.ENSP00000348924 (1)
9606.ENSP00000349467 (1)
9606.ENSP00000352119 (1)
9606.ENSP00000352627 (1)
9606.ENSP00000355778 (1)
9606.ENSP00000358154 (1)
9606.ENSP00000358160 (1)
9606.ENSP00000362621 (1)
9606.ENSP00000364802 (1)
9606.ENSP00000366679 (1)
9606.ENSP00000366956 (1)

ENSEMBL ID

ENSG00000170477 (17)
ENSG00000147251 (4)
ENSG00000247315 (3)

CHEBI ID

CHEBI:15354 (5)
CHEBI:16704 (5)
CHEBI:28044 (5)
CHEBI:30769 (5)
CHEBI:16708 (4)
CHEBI:16811 (4)
CHEBI:16919 (4)
CHEBI:17368 (4)
CHEBI:18012 (4)
CHEBI:18237 (4)
CHEBI:22660 (4)
CHEBI:25017 (4)
CHEBI:28300 (4)
CHEBI:29016 (4)
CHEBI:15318 (3)
CHEBI:15978 (3)
CHEBI:16264 (3)
CHEBI:16449 (3)
CHEBI:16610 (3)
CHEBI:16737 (3)
CHEBI:16857 (3)
CHEBI:17126 (3)
CHEBI:17268 (3)
CHEBI:17562 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:17750 (3)
CHEBI:18107 (3)
CHEBI:18132 (3)
CHEBI:18183 (3)

Metabolite Name

Methionine (4)
Phenylalanine (4)
Choline (3)
Glutamine (3)
Isoleucine (3)
Leucine (3)
Tyrosine (3)
Valine (3)
4-acetamidobutanoate (2)
5-oxoproline (2)
Alanine (2)
Aspartic acid (2)
Betaine (2)
Carnitine (2)
Choline (2)
Citric acid (2)
Creatine (2)
Creatinine (2)
Fumaric acid (2)
Glyceric acid (2)
Hypoxanthine (2)
Lysine (2)
Ornithine (2)
Proline (2)
Pyroglutamic acid (2)
S-methylcysteine (2)
Serine (2)
Threonine (2)
Tryptophan (2)
Uric acid (2)

First Public Date

2025 (1)
2024 (1)

Study type

Transcription profiling by array (78)
RNA-seq of coding RNA (26)
Unknown experiment type (6)
ChIP-seq (6)
Comparative genomic hybridization by array (5)
ATAC-seq (4)
Methylation profiling by array (4)
RNA-seq of coding RNA from single cells (3)
Plant - High-throughput sequencing (2)
MicroRNA profiling by array (2)
Human - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Transcription profiling by RT-PCR (1)
Bisulfite-seq (1)

Release Date

2022 (645)
2025 (601)
2021 (588)
2023 (574)
2024 (509)
2020 (372)
2019 (310)
2018 (250)
2016 (184)
2017 (157)
2014 (150)
2015 (141)
2026 (126)
2013 (92)
2012 (78)
2011 (56)
2010 (45)
2009 (40)
2008 (18)
2007 (13)
2006 (11)
2005 (7)
2004 (5)
2003 (4)
2002 (4)
2001 (4)
1999 (3)
2000 (1)
1998 (1)

Lab affiliation

Proteomics - Bioinformatics (4)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (3)
CNIO (2)
Departament de Bioquímica i Biologia Molecular Universitat de Valencia (2)
Division of Medical Inflammation Research, Dept. Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)
Dr. Jörn Dengjel Prof. for Biochemistry and Cell Biology Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (2)
Agricultural and Plant Biochemistry and Proteomics Research Group, Dept. of Biochemistry and Molecular Biology, University of Cordoba, Agrifood Campus of International Excellence (ceiA3), 14071 Cordoba, Spain (1)
Agroforestry and Plant Biochemistry, Proteomics and Systems Biology. Departament of Biochemistry and Molecular Biology. University of Cordoba. Spain (1)
Albert Resnick, M.D. Associate Professor Head, Weslie R. and William H. Janeway Laboratory of Molecular Metabolism The Rockefeller University (1)
Assistant Professor of Neurology and Angela Dobson and Lyndon Welch Professor of Neurology Department of Neurology | University of Michigan Health System 109 Zina Pitcher Place, 5015 BSRB | Ann Arbor, MI | 48109 (1)
Biotechnology and Cell Signaling, UMR 7242, Strasbourg, France (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Center for Integrative Genomics University of Lausanne Quartier Sorge 1015 Lausanne Switzerland (1)
Center for Scientific Research and Higher Education of Ensenada (CICESE) (1)
Centro Nacional de Biotecnología, Madrid, Spain (1)
Centro de Biotecnología y Genómica de Plantas (CBGP) UPM-INIA/CSIC, Campus de Montegancedo. Autopista M40 (km 38). 28223 Madrid, Spain. (1)
Departamento de Biología Molecular, Centro de Biología Molecular Severo Ochoa, Universidad Autónoma de Madrid (1)
Departamento de interacción epidemiológica, Instituto Nacional de Salud Pública. Universidad No. 655, Col. Santa María Ahuacatitlán, Cuernavaca, Morelos. CP 62100. México. (1)
Department of Biochemestry, Cinvestav-IPN, Mexico City, Mexico. (1)
Department of Biochemistry and Molecular Biology and Agricultural Chemistry and Soil science University of Alicante SPAIN (1)
Department of Biochemistry and Molecular Biology, University of Córdoba, Spain (1)
Department of Biology, Technical University of Darmstadt, Darmstadt, Germany (1)
Department of Biology, University of Crete, Heraklion, Greece Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology - Hellas, Heraklion, Greece Department of Plant Biology, Uppsala Biocenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Uppsaala, Sweden (1)
Department of Biology, University of Crete, Heraklion, Greece Institute of Molecular Biology and Biotechnology, Foundation of Research and Technology- Hellas, Heraklion, Greece Department of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Uppsala, Sweden (1)
Department of Cell Biology, Physiology and Immunology / GC-11, Maimónides Biomedical Research Institute of Córdoba (IMIBIC) / University of Córdoba (UCO) / University Hospital “Reina Sofía” (HURS). (1)
Department of Chemistry University of Wisconsin-Madison (1)
Department of Clinical Sciences, Lund University, Sweden (1)
Department of Molecular Cell Biology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway (1)
Department of Molecular Neuropathology, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, Mexico City, Mexico (1)
Department of Nutrition and Integrative Physiology, College of Health, University of Utah, UT 84112, USA Diabetes and Metabolism Research Center, University of Utah, UT 84112, USA (1)

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RNA-seq data from mature male gonads of marine mussels Mytilus edulis and M. galloprovincialis.

Not available

S-EPMC6197779 | biostudies-literature

Self-(in)compatibility in apricot germplasm is controlled by two major loci, S and M.

Not available

S-EPMC5405505 | biostudies-literature

Multiple CTX-M-type extended-spectrum beta-lactamases in nosocomial isolates of Enterobacteriaceae from a hospital in northern Italy.

Not available

S-EPMC193787 | biostudies-literature

Perturbation of polyamine catabolism affects normal grape ripening of Trincadeira cultivar

Grapes (Vitis vinifera L.) are economically the most important fruit crop worldwide. However, the complexity of molecular and biochemical events that lead to ripening of nonclimacteric fruits is not fully understood. In particular the role of polyaminesM-BM-4 catabolism has been little explored. Ri...

ORGANISM(S): Vitis vinifera

2013-09-30 | E-GEOD-44823 | biostudies-arrayexpress

Comparative Genomics of Field Isolates of Mycobacterium bovis and M. caprae Provides Evidence for Possible Correlates with Bacterial Viability and Virulence.

Not available

S-EPMC4652870 | biostudies-literature

A multilocus phylogeny of the fish genus Poeciliopsis: Solving taxonomic uncertainties and preliminary evidence of reticulation.

Not available

S-EPMC6392363 | biostudies-literature

Hypusination Orchestrates the Antimicrobial Response of Macrophages

Innate responses of myeloid cells defend against pathogenic bacteria via inducible effectors. Deoxyhypusine synthase (DHPS) catalyzes the transfer of the N-moiety of spermidine to the lysine-50 residue of eukaryotic translation initiation factor 5A (EIF5A) to form the amino acid hypusine. Hypusinate...

2021-04-06 | MTBLS607 | MetaboLights

Spontaneous behavioral responses in the orofacial region: a model of trigeminal pain in mouse.

Not available

S-EPMC3664930 | biostudies-literature

Secretome Prediction of Two M. tuberculosis Clinical Isolates Reveals Their High Antigenic Density and Potential Drug Targets.

Not available

S-EPMC5293778 | biostudies-literature

SCF(FBXW7)-mediated degradation of p53 promotes cell recovery after UV-induced DNA damage.

Not available

S-EPMC6766643 | biostudies-literature