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TranscriptomicsThe Submergence Tolerance Regulator Sub1A Mediates Stress-responsive Expression of AP2/ERF Transcription Factors
Rice NSF45K microarray experiment to dissect submergence tolerance response in submergence tolerant rice plant, M202(Sub1): We previously characterized the rice (Oryza sativa L.) Sub1 locus encoding three Ethylene Responsive Factor (ERF) transcriptional regulators. Genotypes carrying the Sub1A-1 a...
ORGANISM(S): Oryza sativa 
2010-03-08 | E-GEOD-17704 | biostudies-arrayexpress
TranscriptomicsDirect calibration of PICKY-designed microarrays
Picky is an optimal microarray design software which designed the NSF Rice 45K Array. A series of microarray experiments using a one-chip version of this array were conducted to validate as well as to develop a calibration method for Picky designed microarrays. Synthesized samples with known content...
ORGANISM(S): synthetic construct 
2010-06-21 | E-GEOD-14717 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of RaxR-regulon members of Xanthomonas oryzae pv. oryzae PXO99A
Xanthomonas oryzae pv. oryzae strain PXO99A, so called Xoo, is disable to infect in rice cultivar carrying Xa21 gene. Disrupted mutant of raxR gene, response regulator of two-component regulatory system (TCS), in Xoo was previously shown to partially retrieve back the bacterial capability to establi...
ORGANISM(S): Xanthomonas oryzae pv. oryzae PXO99A 
2010-09-09 | E-GEOD-14498 | biostudies-arrayexpress
TranscriptomicsRice Submergence Stress Response
Two rice genotypes, M202 (intolerant) and M202(Sub1), a tolerant genotype, were submerged for 1 day and 6 day and sampled for identifying differentially expressed genes. 4 samples. M202- 1 day and 6 day; M202(Sub1)- 1 day and 6 day
ORGANISM(S): Oryza sativa 
2013-12-15 | E-GEOD-41103 | biostudies-arrayexpress
TranscriptomicsRice leaf transcriptome from 6 week old plants
Three biological replicates from the leaves of rice genotype Kitaake were obtained for transcriptome analyses. This is part of a study comparing expression and protein levels. Three replicates from plants growing at the same time in greenhouse conditions
ORGANISM(S): Oryza sativa 
2010-07-08 | E-GEOD-22788 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Density-dependent of Xanthomonas oryzae pv. oryzae PXO99A and PXO99∆ax21
Xanthomonas oryzae pv. oryzae strain PXO99A, so called Xoo, is disable to infect in rice cultivar carrying Xa21 gene. A set of experiments indicated that Ax21 is quorum sensing factor in PXO99 strain. To observe fine-tuned details how Ax21 controls expression of PXO99 in response to change of cell p...
ORGANISM(S): Xanthomonas oryzae pv. oryzae PXO99A 
2012-01-01 | E-GEOD-24989 | biostudies-arrayexpress
ProteomicsBiosynthesis and secretion of the microbial sulfated peptide RaxX and binding to the rice XA21 immune receptor
The rice immune receptor XA21 is activated by the sulfated microbial peptide RaxX (required for activation of XA21-mediated immunity X) produced by Xanthomonas oryzae pv. oryzae (Xoo). Mutational studies and targeted proteomics revealed that RaxX is processed and secreted by the protease/transporter...
ORGANISM(S): Xanthomonas Oryzae Pv. Oryzae 
2019-04-16 | PXD013389 | panorama
TranscriptomicsTranscription profiling of PhoP-regulon members under low Mg2+ Ca2+ condition of Xanthomonas oryzae pv. oryzae PXO99A
In bacteria, two-component regulatory system (TCSs) is generally characterized by a simple phosphotransfer scheme, composed of a sensor domain (a histidine kinase) and a response domain (a response regulator), which is responsible for detection of external stimuli. PhoP-PhoQ TCS of Xanthomonas oryz...
ORGANISM(S): Xanthomonas oryzae pv. oryzae PXO99A 
2008-07-16 | E-GEOD-12099 | biostudies-arrayexpress
TranscriptomicsNSF 20K Oligo Arrays to Dissect Rice Defense Response Pathways
With the availability of a high quality draft rice genome sequence, large mutant collections, and gene expression oligo arrays for rice, we are now well positioned to dissect rice defense pathways. To do this, we performed global expression analyses to identify genes that are differentially expresse...
ORGANISM(S): Oryza sativa 
2008-05-10 | E-GEOD-9653 | biostudies-arrayexpress
TranscriptomicsRice NSF45K microarray experiment to explain Xa21, NH1 and NRR mediated defense responses in rice
Rice Xa21 resistance gene, which encodes a protein with predicted leucine-rich repeat (LRR), transmembrane, juxtamembrane, and intracellular kinase domains, conferred immunity to diverse strains of Xanthomonas oryzae pv. oryzae (Xoo). We generated Xa21 plant on TP309 background (Oryza Sativa Japonic...
ORGANISM(S): Oryza sativa 
2011-02-28 | E-GEOD-22112 | biostudies-arrayexpress
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