Rose - OmicsDI

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Unknown (11473)
Genomics (565)
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Proteomics (163)
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Genomic (2)
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Multiomics (1)

Organisms

Mus musculus (124)
Homo sapiens (107)
Rosa hybrid cultivar (13)
Saccharomyces cerevisiae (12)
Arabidopsis thaliana (11)
Rattus norvegicus (10)
Eucalyptus grandis (9)
Rosa chinensis (7)
Pseudomonas aeruginosa (6)
Anopheles gambiae (5)
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Pseudo-nitzschia multiseries (1)
Junonia coenia (1)
Saccharomyces cerevisiae x Saccharomyces paradoxus (1)
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Eucalyptus camaldulensis x Eucalyptus grandis (1)
Human adenovirus 40 (1)
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Organisms

Solanum tuberosum (56)
Homo sapiens (36)
Rosa hybrid cultivar (29)
Mus musculus (20)
mangrove metagenome (19)
Rosa chinensis (18)
Saccharomyces cerevisiae (8)
Rattus norvegicus (6)
rhizosphere metagenome (6)
Endotricha flammealis (4)
Arge pagana (4)
Rosa (4)
Rosa rugosa (4)
Caenorhabditis elegans (4)
Arabidopsis thaliana (4)
Trifolium hirtum (4)
Diplocarpon rosae (3)
Pheucticus ludovicianus (3)
Rosa lucieae (3)
Gallus gallus (3)
Rosa palustris (2)
Francisella marina (2)
Macrosiphum rosae (2)
Catharanthus roseus (2)
Selenicereus undatus (2)
Auxenochlorella pyrenoidosa (2)
Malus domestica (2)
Sus scrofa (2)
Escherichia coli (2)
Diplolepis rosae (1)

Repository

ENA (522)
biostudies-arrayexpress (263)
pride (117)
geo (73)
MassIVE (32)
MetaboLights (25)
EGA (23)
iProX (10)
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dbGaP (2)
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Tissue

Cell culture (21)
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Blood (1)
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Disease

Colon cancer (4)
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Normal (2)
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Colitis (2)
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Glioblastoma (2)
PC-3/FGF-8b cell inoculated (1)
Acute Myeloid Leukemia (1)
Adenocarcinoma (1)
Central nervous system cancer (1)
Malignant neoplasm of rectosigmoid junction (1)
Not Available (1)
Acute leukemia (1)
Amyotrophic lateral sclerosis (1)
Autism spectrum disorder (1)
Bacterial infectious disease (1)
Brain glioblastoma multiforme (1)
Brain ischemia (1)
Breast adenocarcinoma (1)
Breast cancer (1)
COVID-19 (1)
Cataract (1)
Chlamydia trachomatis infectious disease (1)
Diarrhea (1)
Disease free (1)
Epilepsy (1)
Gastric adenocarcinoma (1)
Gastritis (1)

Technology Type

Mass Spectrometry (117)
Shotgun proteomics (51)
Data-dependent acquisition (21)
Mass spectrometry (19)
Bottom-up proteomics (17)
Affinity purification coupled with mass spectrometry proteomics (15)
Data-independent acquisition (14)
Gel-based experiment (8)
SWATH MS (8)
Mass spectrometry assay (6)
Illumina HiSeq 2000 (5)
Top-down proteomics (4)
NMR spectroscopy (1)
All-ion fragmentation (1)
Glycoproteomics (1)
HDMSE (1)
MSE (1)
Olink affinity proteomics (1)
Proteogenomics (1)
RNA mass spectrometry (1)
SRM/MRM (1)

Instrument Platform

Orbitrap Fusion Lumos (14)
Orbitrap Eclipse (10)
Illumina NovaSeq 6000 (8)
Illumina HiSeq 2000 (8)
Illumina HiSeq 2500 (7)
NextSeq 500 (5)
Orbitrap Fusion (5)
Illumina HiSeq 4000 (3)
Q Exactive (3)
454 GS FLX (2)
Illumina MiSeq (2)
5975C GC/MS(Agilent instrument model) (2)
6546 Q-TOF LC/MS (Agilent instrument model) (2)
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ACCRE (1)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)
6530A Q-TOF LC/MS (1)
EVOQ Elite (1)
Impact II (1)
Instrument (1)

Publication Date

2014 (46)
2023 (43)
2025 (42)
2011 (40)
2013 (35)
2012 (35)
2024 (33)
2021 (30)
2010 (28)
2026 (27)
2020 (23)
2016 (22)
2015 (20)
2022 (17)
2019 (16)
2018 (15)
2008 (13)
2017 (12)
2009 (12)
2006 (4)
2007 (3)
2004 (2)
2005 (1)

UNIPROT ID/AC

Q9NZ42 (1)
P56817 (1)
Q07954 (1)
P02649 (1)
O00330 (1)
Q94BT6 (1)
Q6R0H1 (1)
P92973 (1)
P05067 (1)
Q93WK5 (1)
Q8L500 (1)
Q9SQI2 (1)
Q9LKL2 (1)
35KD_MYCTU (1)
3BHS_MYCTU (1)
3MGH_MYCTU (1)
83332.Rv1180 (1)
83332.Rv1370c (1)
83332.Rv1757c (1)
83332.Rv1763 (1)
83332.Rv2098c (1)
83332.Rv2105 (1)
83332.Rv2168c (1)
83332.Rv2278 (1)
83332.Rv2354 (1)
83332.Rv2480c (1)
83332.Rv2648 (1)
83332.Rv2815c (1)
83332.Rv3117 (1)
83332.Rv3118 (1)

CHEBI ID

CHEBI:30769 (8)
CHEBI:16708 (6)
CHEBI:16335 (6)
CHEBI:16467 (6)
CHEBI:17895 (6)
CHEBI:17295 (6)
CHEBI:25017 (5)
CHEBI:15428 (5)
CHEBI:15741 (5)
CHEBI:17268 (5)
CHEBI:6650 (5)
CHEBI:15891 (5)
CHEBI:16737 (5)
CHEBI:16643 (5)
CHEBI:15756 (5)
CHEBI:26271 (4)
CHEBI:4170 (4)
CHEBI:18186 (4)
CHEBI:15728 (4)
CHEBI:16750 (4)
CHEBI:33711 (1)
CHEBI:35222 (1)
CHEBI:25350 (1)
CHEBI:11814 (1)
CHEBI:16113 (1)
CHEBI:36080 (1)
CHEBI:15531 (1)
CHEBI:15351 (1)
CHEBI:15361 (1)
CHEBI:33699 (1)

Metabolite Name

Behenic acid (4)
Adenine (4)
N-Acetyl-L-glutamine (3)
Hydroxyphenyllactic acid (3)
L-Arginine (3)
Succinic acid (3)
Suberic acid (3)
L-proline betaine (2)
N(omega),N(omega)-dimethyl-L-arginine (2)
Xanthosine 5'-Monophosphate (2)
HEPTADECANOATE (2)
AZELAIC ACID (2)
S,S-dimethyl-beta-propiothetin (2)
3-(2-HYDROXYPHENYL)PROPANOATE (2)
PI 36:1 (2)
PI 38:4 (2)
Piscidic Acid (2)
Tulathromycin A (2)
PI 38:3 (2)
2-Hydroxyestradiol (2)
Atorvastatin (2)
Topotecan (2)
3-Nitrotyrosine (2)
Glycine betaine (2)
Ectoine (2)
Flavin Mononucleotide (2)
L-leucine (2)
L-isoleucine (2)
PE(16:0/0:0) (2)
Epiandrosterone (2)

First Public Date

2025 (125)
2026 (82)
2024 (56)
2023 (47)
2020 (41)
2014 (31)
2021 (29)
2019 (25)
2022 (22)
2018 (21)
2013 (14)
2017 (12)
2016 (10)
2015 (7)

Modelling Approach

Ordinary differential equation model (3)
Other (1)

Study status

Recruiting (1)

Lab affiliation

Vanderbilt University Proteomics Core (17)
China Agricultural University (3)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (3)
Tianjin Medical University General Hospital (3)
Vanderbilt University (3)
Cell Biology Department Harvard Medical School (2)
Nutrient Metabolism & Signalling Laboratory, Metabolism, Diabetes and Obesity Program, Biomedicine Discovery Institute, Monash University, Victoria 3800, Australia (2)
University of California San Francisco (2)
Vanderbilt Proteomics Core (2)
1 Department of Biochemistry and Molecular Biology, Metabolism, Diabetes and Obesity Program, Biomedicine Discovery Institute, Monash University, Clayton 3800, Australia. (1)
1Institute of Sports Medicine Copenhagen, Department of Orthopedic Surgery, Copenhagen University Hospital – Bispebjerg and Frederiksberg; Copenhagen, Denmark 2Department of Clinical Medicine, University of Copenhagen; Denmark (1)
1Nutrient Metabolism & Signalling Laboratory, Metabolism, Diabetes and Obesity Program, Biomedicine Discovery Institute, Monash University, Victoria 3800, Australia. 2Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, Faculty of Medicine, Nursing & Health Sciences, Monash University, Victoria 3800, Australia. (1)
5th Affiliated Hospital of Sun Yat-sen University (1)
Academia Sinica (1)
Animal Reproduction Department, Spermatology in Animal Production and Conservation laboratory (INIA-CSIC), Madrid, Spain. (1)
Applied Veterinary Morphology, Department of Veterinary Sciences, University of Antwerp, Belgium (1)
Ascano Lab, Biochemistry Department, Vanderbilt University, Nashville TN, USA (1)
Associate Professor, Mayor Lab, Department of Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, 2125 East Mall, Vancouver, BC V6T1Z4, Canada (1)
Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China (1)
Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Development of Ornamental Horticulture, China Agricultural University, Beijing, China (1)
Biochemistry and Proteomics Laboratories, Deparment of Chemistry and biomolecular Science, Clarkson University, Potsdam NY, USA (1)
Biology (1)
Cambridge Institute for Medical Research (1)
Cantonal Hospital St. Gallen, Switzerland (1)
Cell Biology Harvard Medical School USA (1)
Chinese Academy of Inspection and Quarantine (1)
College of Veterinary Medicine, Gansu Agricultural University (1)
Core Facility for Mass Spectrometry & Proteomics Center for Molecular Biology of Heidelberg University Heidelberg, Germany (1)
Core facility for mass spectrometry and proteomics, ZMBH, University Heidelberg, IM Neuenheimer Feld 282, 69120 Heidelberg, Germany (1)
Cutaneous Oncology and Immunology Moffitt Cancer Center Tampa, FL, USA (1)

IsPrivate

False (4)

Submitter Keywords

Machine Learning Model (1)

Classification

bacteria (6)
fungi (1)

Modification

2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (165)
RNA-seq of coding RNA (37)
RNA-seq of non coding RNA (8)
Other (6)
ChIP-seq (6)
Comparative genomic hybridization by array (5)
RNA-seq of coding RNA from single cells (5)
Methylation profiling by array (4)
Baseline (3)
Genotyping by array (3)
DNA-seq (3)
Unknown experiment type (2)
Animal - One-color microarray (2)
Animal - High-throughput sequencing (2)
RNA-seq of total RNA (2)
ChIP-chip by SNP array (1)
Transcription profiling by SAGE (1)
Two-color microarray (1)
ChIP-chip by tiling array (1)
Plant - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Whole chromosome random sequencing (1)
ChIP-chip by array (1)
ATAC-seq (1)
Genotyping by high throughput sequencing (1)
Interventional (1)

Release Date

2025 (1775)
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2023 (1114)
2024 (1026)
2020 (809)
2019 (677)
2018 (621)
2017 (537)
2016 (468)
2015 (412)
2014 (358)
2013 (251)
2026 (250)
2012 (247)
2011 (202)
2010 (164)
2009 (115)
2008 (88)
2007 (52)
2005 (46)
2006 (40)
2003 (30)
2004 (27)
1999 (17)
2002 (16)
2000 (15)
2001 (12)
1998 (9)
1997 (4)

Location

Iran (1)

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Expression profiles of water deficit stress (WDS) regulated genes in rose petals

Water deficit stress (WDS) is a crucial factor that causes the inhibition of petal expansion and abnormal flower opening in rose. The regulatory mechanisms of petal expansion by WDS at transcriptional level were investigated by analysis expression profiles under WDS. Analysis used total RNA samples ...

ORGANISM(S): Rosa hybrid cultivar

2013-01-09 | E-GEOD-33217 | biostudies-arrayexpress

Chloroplast-dependent programmed cell death is activated in Arabidopsis cell cultures after singlet oxygen production by Rose Bengal

Arabidopsis thaliana cell suspension cultures (ACSC) were subjected to 30-min, mild chemical treatments with three different singlet oxygen elicitors at low-medium light conditions (150 µE m–2 s–1) with the aim of getting a better understanding of singlet oxygen-mediated defence responses in plants....

ORGANISM(S): Arabidopsis thaliana

2014-03-13 | E-GEOD-43551 | biostudies-arrayexpress

Proteome and Ubiquitome Changes during Rose Petal Senescence

Petal senescence involves numerous programmed changes in biological and biochemical processes. Ubiquitination plays a critical role in protein degradation, a hallmark of organ senescence. Therefore, we investigated changes in the proteome and ubiquitome of senescing rose (Rosa hybrida) petals to bet...

ORGANISM(S): Rosa chinensis

2020-05-27 | PXD016490 | Pride

Epichloe festucae strain:Rose City

Epichloe festucae strain:Rose City Genome sequencing and assembly

PRJNA677971 | ENA

Col_Rose Bengal versus lox1lox5_Rose Bengal

Rose Bengal-treated wild type seedlings versus Rose Bengal-treated lox1lox5 mutant

ORGANISM(S): Arabidopsis thaliana

2011-03-01 | E-MEXP-3010 | biostudies-arrayexpress

Xanthomonas alfalfae strain:GEV-Rose-07

Xanthomonas alfalfae strain:GEV-Rose-07 Genome sequencing and assembly

PRJNA342189 | ENA

Col_Rose Bengal versus eto1-14_Rose Bengal

Rose Bengal-treated wild-type seedlings versus Rose Bengal-treated eto1-14 mutant

ORGANISM(S): Arabidopsis thaliana

2011-03-01 | E-MEXP-3011 | biostudies-arrayexpress

Hierarchical regulation in a KRAS pathway-dependent transcriptional network revealed by a reverse-engineering approach (RAS-ROSE and ROSE with siRNA)

RAS mutations are highly relevant for progression and therapy response of human tumours, but the genetic network that ultimately executes the oncogenic effects is poorly understood. Here we used a reverse-engineering approach in an ovarian cancer model to reconstruct KRAS oncogene-dependent cytoplas...

ORGANISM(S): Rattus norvegicus

2012-07-31 | E-GEOD-38585 | biostudies-arrayexpress

Col versus Col_Rose Bengal

MS treated wild-type Arabidopsis seedlings versus MS Rose Bengal (RB)-containing medium (10 microM) wild type treated seedlings

ORGANISM(S): Arabidopsis thaliana

2011-03-01 | E-MEXP-3009 | biostudies-arrayexpress

Diploid rose genetic map

PRJNA72603 | ENA

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