Rose A L AL - OmicsDI

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Unknown (482)
Transcriptomics (73)
Proteomics (12)
Genomics (8)
Metabolomics (8)
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Mus musculus (28)
Homo sapiens (21)
Saccharomyces cerevisiae (6)
Eucalyptus grandis (5)
Arabidopsis thaliana (5)
Gallus gallus (4)
Rosa hybrid cultivar (3)
Rosa chinensis (2)
Malus domestica (2)
Medicago truncatula (2)
Rattus norvegicus (2)
Saccharomyces cerevisiae x Saccharomyces paradoxus (1)
Lachancea waltii (1)
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Bacillus subtilis subsp. subtilis (1)
Prunus persica (1)
Anopheles gambiae (1)
Pseudomonas aeruginosa (1)
Danio rerio (1)
Manihot esculenta (1)
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environmental samples (1)

Repository

biostudies-arrayexpress (78)
pride (10)
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EGA (3)
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Tissue

Kidney (5)
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Disease

Acute Myeloid Leukemia (1)
Central nervous system cancer (1)
Not Available (1)
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Technology Type

Mass Spectrometry (10)
Mass spectrometry (8)
Shotgun proteomics (8)
SWATH MS (2)
Gel-based experiment (1)

Instrument Platform

NextSeq 500 (4)
Illumina HiSeq 2500 (3)
Illumina NovaSeq 6000 (3)
Liquid Chromatography MS - positive - hilic (3)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
Gas Chromatography MS - (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
454 GS FLX (1)
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ACCRE (1)
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Liquid Chromatography MS - alternating - hilic (1)
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Publication Date

2011 (14)
2014 (11)
2012 (9)
2023 (8)
2013 (7)
2010 (7)
2024 (6)
2020 (6)
2016 (5)
2021 (4)
2015 (3)
2009 (3)
2008 (3)
2022 (2)
2019 (2)
2007 (2)
2026 (2)
2025 (1)
2018 (1)
2017 (1)
2006 (1)

UNIPROT ID/AC

35KD_MYCTU (1)
3BHS_MYCTU (1)
3MGH_MYCTU (1)
83332.Rv1180 (1)
83332.Rv1370c (1)
83332.Rv1757c (1)
83332.Rv1763 (1)
83332.Rv2098c (1)
83332.Rv2105 (1)
83332.Rv2168c (1)
83332.Rv2278 (1)
83332.Rv2354 (1)
83332.Rv2480c (1)
83332.Rv2648 (1)
83332.Rv2815c (1)
83332.Rv3117 (1)
83332.Rv3118 (1)
83332.Rv3184 (1)
83332.Rv3186 (1)
83332.Rv3325 (1)
83332.Rv3381c (1)
83332.Rv3474 (1)
83332.Rv3514 (1)
83332.Rv3619c (1)
A85A_MYCTU (1)
A85B_MYCTU (1)
A85C_MYCTU (1)
AAC2_MYCTU (1)
ABC1_MYCTU (1)
ACDP_MYCTU (1)

CHEBI ID

CHEBI:16610 (4)
CHEBI:16708 (4)
CHEBI:15318 (3)
CHEBI:15728 (3)
CHEBI:15741 (3)
CHEBI:15756 (3)
CHEBI:16335 (3)
CHEBI:16525 (3)
CHEBI:16737 (3)
CHEBI:16750 (3)
CHEBI:16927 (3)
CHEBI:17268 (3)
CHEBI:18107 (3)
CHEBI:25017 (3)
CHEBI:28865 (3)
CHEBI:30769 (3)
CHEBI:4170 (3)
CHEBI:132244 (2)
CHEBI:15355 (2)
CHEBI:15428 (2)
CHEBI:15603 (2)
CHEBI:15698 (2)
CHEBI:15746 (2)
CHEBI:15753 (2)
CHEBI:15760 (2)
CHEBI:15843 (2)
CHEBI:15887 (2)
CHEBI:15891 (2)
CHEBI:15947 (2)
CHEBI:16027 (2)

Metabolite Name

Citric acid (2)
Creatinine (2)
Cucurbitacin B (2)
Hydroxyphenyllactic acid (2)
Maleic acid (2)
Ornithine (2)
Pyroglutamic acid (2)
Xanthosine (2)
(+)-Syringaresinol (1)
(+)-Veraguensin (1)
(6Z)-Octadecenoic acid (1)
(R)-3-Hydroxybutyric acid (1)
(R)-mandelic Acid (1)
1,3-bisphospho-D-glyceric acid (1)
1,4-beta-D-Glucan (1)
1,5-Anhydrosorbitol (1)
1-(beta-D-Ribofuranosyl)-1,4-dihydronicotinamide (1)
1-(sn-Glycero-3-phospho)-1D-myo-inositol (1)
1-Kestose (1)
11-Dehydro-thromboxane B2 (1)
11-Dehydrocorticosterone (1)
12,13-DHOME (1)
12-Hydroxydodecanoic acid (1)
12-Keto-leukotriene B4 (1)
13(S)-HPOT (1)
13S-hydroxyoctadecadienoic acid (1)
16-Hydroxy hexadecanoic acid (1)
2',3'-Cyclic CMP (1)
2',4'-Dihydroxyacetophenone (1)
2,7-Dihydroxy-4'-methoxyisoflavanone (1)

Study type

Transcription profiling by array (45)
RNA-seq of coding RNA (9)
ChIP-seq (4)
Baseline (3)
Other (3)
Animal - High-throughput sequencing (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of total RNA (2)
ChIP-chip by SNP array (1)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Comparative genomic hybridization by array (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (64)
2022 (56)
2024 (52)
2018 (50)
2025 (45)
2023 (45)
2020 (36)
2014 (28)
2015 (25)
2016 (24)
2017 (23)
2011 (22)
2019 (20)
2013 (18)
2012 (17)
2010 (11)
2026 (10)
2009 (4)
2008 (4)
2007 (3)
2006 (1)
2002 (1)
2001 (1)

Lab affiliation

Aarhus University Department of Biomedicine DK-8000 Aarhus C (4)
Aarhus University Department of Biomedicine DK-8000 Aarhus C (lab head) (1)
Cambridge Institute for Medical Research (1)
Henan Agricultural University (1)
Institute of Molecular Plant Biology (IMPB), Department of Biology, ETH Zurich (1)
Professor Biology, Dalhousie University (1)
Westlake Laboratory of Life Sciences and Biomedicine, Key Laboratory of Structural Biology of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China. (1)

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A machine learning model for the prediction and verification of the protective intestinal microbiota-derived L-valine in sepsis

The intestinal microflora and metabolites produced by these microbes serve as important regulators of the development of sepsis. Accordingly, this study was designed to systematically explore the relationships between the regulation of septicemia and both the intestinal flora and fecal metabolite...

2023-07-28 | MTBLS7866 | MetaboLights

Chloroplast-dependent programmed cell death is activated in Arabidopsis cell cultures after singlet oxygen production by Rose Bengal

Arabidopsis thaliana cell suspension cultures (ACSC) were subjected to 30-min, mild chemical treatments with three different singlet oxygen elicitors at low-medium light conditions (150 µE m–2 s–1) with the aim of getting a better understanding of singlet oxygen-mediated defence responses in plants....

ORGANISM(S): Arabidopsis thaliana

2014-03-13 | E-GEOD-43551 | biostudies-arrayexpress

Expression profiles of water deficit stress (WDS) regulated genes in rose petals

Water deficit stress (WDS) is a crucial factor that causes the inhibition of petal expansion and abnormal flower opening in rose. The regulatory mechanisms of petal expansion by WDS at transcriptional level were investigated by analysis expression profiles under WDS. Analysis used total RNA samples ...

ORGANISM(S): Rosa hybrid cultivar

2013-01-09 | E-GEOD-33217 | biostudies-arrayexpress

Col_Rose Bengal versus lox1lox5_Rose Bengal

Rose Bengal-treated wild type seedlings versus Rose Bengal-treated lox1lox5 mutant

ORGANISM(S): Arabidopsis thaliana

2011-03-01 | E-MEXP-3010 | biostudies-arrayexpress

Col_Rose Bengal versus eto1-14_Rose Bengal

Rose Bengal-treated wild-type seedlings versus Rose Bengal-treated eto1-14 mutant

ORGANISM(S): Arabidopsis thaliana

2011-03-01 | E-MEXP-3011 | biostudies-arrayexpress

affy_floral_rose-Study of floral initiation and recurrent blooming in rose

affy_floralangers_rose - affy_floral_rose - - Which genes are induced during floral initiation? - Are the genes involved in floral initiation identical between our 3 genotypes? - Which genes are involved in the control of recurrent blooming in rose? - Which genes are diferentially expressed between ...

ORGANISM(S): Rosa luciae

2011-08-31 | E-GEOD-17370 | biostudies-arrayexpress

Col versus Col_Rose Bengal

MS treated wild-type Arabidopsis seedlings versus MS Rose Bengal (RB)-containing medium (10 microM) wild type treated seedlings

ORGANISM(S): Arabidopsis thaliana

2011-03-01 | E-MEXP-3009 | biostudies-arrayexpress

affy_rose_2012_06: RhDiF1 knockdown

affy_rose_2012_06 - affy_rose_2012_06 - - Study of rose perfume by comparing a wild-tpe rose with one in which the expression of a scent gene has been altered.-Study of rose perfume by comparing a wild-tpe rose with one in which the expression of a scent gene has been altered. 8 arrays - rose; norma...

ORGANISM(S): Rosa chinensis

2013-09-12 | E-GEOD-45236 | biostudies-arrayexpress

CTH exacerbates Helicobacter pylori immunopathogenesis by promoting macrophage metabolic remodeling and activation

Macrophages play a crucial role in the inflammatory response to the human stomach pathogen Helicobacter pylori, which infects half of the world's population and causes gastric cancer. Recent studies have highlighted the importance of macrophage immunometabolism in their activation state and function...

2022-06-14 | MTBLS2851 | MetaboLights

affy_duplicature_lyon_rose. Double flower phenomenon: Control of petal number in roses

affy_duplicature_lyon_rose. The objective is to identify the genes involved in petal doubling in rose. In this study we are using two rosa gallica genotypes: wild-type (simple flower rose) and Cardinal de Richelieu (double flower rose), and two rosa hybrida genotypes : Souvenir de la Malmaison, whic...

ORGANISM(S): Rosa hybrid cultivar

2011-08-31 | E-GEOD-18353 | biostudies-arrayexpress

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