Rose R R - OmicsDI

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Unknown (3618)
Transcriptomics (156)
Proteomics (68)
Genomics (47)
Metabolomics (19)
Models (1)
Other (1)

Organisms

Mus musculus (87)
Homo sapiens (85)
Eucalyptus grandis (6)
Saccharomyces cerevisiae (5)
Arabidopsis thaliana (5)
Rattus norvegicus (5)
Rosa chinensis (5)
Danio rerio (3)
Rosa hybrid cultivar (2)
Prunus persica (2)
Anopheles gambiae (2)
Solanum lycopersicum (2)
Mycobacterium tuberculosis H37Rv (2)
Pseudo-nitzschia multiseries (1)
Saccharomyces cerevisiae x Saccharomyces paradoxus (1)
Lachancea waltii (1)
Fragaria vesca (1)
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Bacillus subtilis subsp. subtilis (1)
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Escherichia coli str. K-12 substr. MG1655 (1)
Candida albicans (1)
Rosa (1)
Hibiscus syriacus (1)
Anaerostipes caccae (1)

Organisms

Homo sapiens (3)
Mus musculus (3)
Rosa chinensis (2)
Rosa lucieae (1)
Rosa (1)
Rosa bracteata (1)
Escherichia coli str. K-12 substr. MG1655 (1)
soil metagenome (1)

Repository

biostudies-arrayexpress (156)
pride (56)
ENA (25)
EGA (19)
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geo (4)
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Tissue

Cell culture (11)
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Blood (1)
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Heart (1)
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Hippocampus (1)
Lens (1)
Lens fiber cell (1)
U2-OS cell (1)

Disease

Colorectal cancer (2)
PC-3/FGF-8b cell inoculated (1)
Acute Myeloid Leukemia (1)
Central nervous system cancer (1)
Normal (1)
Acute leukemia (1)
Alzheimer's disease (1)
Autism spectrum disorder (1)
Bacterial infectious disease (1)
Brain ischemia (1)
Breast cancer (1)
Colitis (1)
Colon cancer (1)
Diarrhea (1)
Epilepsy (1)
Osteosarcoma (1)
Pancreatic cancer (1)
Senile cataract (1)
Viral infectious disease (1)

Technology Type

Mass Spectrometry (56)
Shotgun proteomics (23)
Mass spectrometry (15)
Bottom-up proteomics (11)
Affinity purification coupled with mass spectrometry proteomics (8)
Data-dependent acquisition (8)
Data-independent acquisition (6)
SWATH MS (6)
Illumina HiSeq 2000 (5)
Mass spectrometry assay (3)
Gel-based experiment (3)
NMR spectroscopy (1)
All-ion fragmentation (1)
Olink affinity proteomics (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - hilic (7)
Illumina HiSeq 2500 (5)
Liquid Chromatography MS - negative - hilic (5)
Illumina NovaSeq 6000 (4)
Orbitrap Fusion Lumos (4)
Orbitrap Fusion (3)
Gas Chromatography MS - (3)
Liquid Chromatography MS - alternating - hilic (3)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina MiSeq (2)
Illumina HiSeq 2000 (2)
NextSeq 500 (2)
5975C GC/MS(Agilent instrument model) (2)
6546 Q-TOF LC/MS (Agilent instrument model) (2)
QTRAP 6500 (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - negative - reverse-phase (2)
454 GS FLX (1)
Illumina Genome Analyzer (1)
G2565AA DNA microarray scanner [Agilent] (1)
G2565BA DNA microarray scanner [Agilent] (1)
Illumina Genome Analyzer II (1)
ACCRE (1)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)
6550 iFunnel Q-TOF LC/MS (1)
Q Exactive (1)
Q Exactive HF-X (1)
Q Exactive Plus (Thermo Scientific) (1)

Publication Date

2023 (24)
2012 (24)
2011 (22)
2014 (21)
2025 (15)
2013 (15)
2021 (14)
2010 (14)
2016 (13)
2015 (12)
2026 (11)
2024 (10)
2020 (10)
2008 (8)
2009 (7)
2022 (6)
2018 (6)
2017 (5)
2019 (3)
2006 (3)
2007 (2)
2005 (1)
2004 (1)

UNIPROT ID/AC

35KD_MYCTU (1)
3BHS_MYCTU (1)
3MGH_MYCTU (1)
83332.Rv1180 (1)
83332.Rv1370c (1)
83332.Rv1757c (1)
83332.Rv1763 (1)
83332.Rv2098c (1)
83332.Rv2105 (1)
83332.Rv2168c (1)
83332.Rv2278 (1)
83332.Rv2354 (1)
83332.Rv2480c (1)
83332.Rv2648 (1)
83332.Rv2815c (1)
83332.Rv3117 (1)
83332.Rv3118 (1)
83332.Rv3184 (1)
83332.Rv3186 (1)
83332.Rv3325 (1)
83332.Rv3381c (1)
83332.Rv3474 (1)
83332.Rv3514 (1)
83332.Rv3619c (1)
A85A_MYCTU (1)
A85B_MYCTU (1)
A85C_MYCTU (1)
AAC2_MYCTU (1)
ABC1_MYCTU (1)
ACDP_MYCTU (1)

CHEBI ID

CHEBI:30769 (7)
CHEBI:16335 (5)
CHEBI:16467 (5)
CHEBI:17295 (5)
CHEBI:17895 (5)
CHEBI:6650 (5)
CHEBI:15428 (4)
CHEBI:15741 (4)
CHEBI:15756 (4)
CHEBI:16027 (4)
CHEBI:16708 (4)
CHEBI:17268 (4)
CHEBI:15603 (3)
CHEBI:15699 (3)
CHEBI:15728 (3)
CHEBI:15729 (3)
CHEBI:15843 (3)
CHEBI:15891 (3)
CHEBI:16344 (3)
CHEBI:16349 (3)
CHEBI:16411 (3)
CHEBI:16414 (3)
CHEBI:16610 (3)
CHEBI:16643 (3)
CHEBI:16737 (3)
CHEBI:16750 (3)
CHEBI:16857 (3)
CHEBI:16919 (3)
CHEBI:17191 (3)
CHEBI:17196 (3)

Metabolite Name

3-(2-HYDROXYPHENYL)PROPANOATE (2)
3-Nitrotyrosine (2)
AZELAIC ACID (2)
Adenine (2)
Adenosine (2)
Arachidonic acid (2)
Behenic acid (2)
Creatinine (2)
Ectoine (2)
Glycine betaine (2)
HEPTADECANOATE (2)
L-arginine (2)
L-isoleucine (2)
L-leucine (2)
L-phenylalanine (2)
L-proline (2)
L-proline betaine (2)
L-tyrosine (2)
L-valine (2)
Malic acid (2)
N(omega),N(omega)-dimethyl-L-arginine (2)
PI 36:1 (2)
PI 38:3 (2)
PI 38:4 (2)
S,S-dimethyl-beta-propiothetin (2)
Undecanoic acid (2)
Xanthine (2)
((4-(4-Amidinophenoxy)Butanoyl)Aspartyl)Valine (1)
(+/-)-Tryptophan (1)
(-)-Epicatechin (1)

First Public Date

2025 (6)
2014 (5)
2024 (3)
2022 (3)
2026 (2)
2018 (2)
2023 (1)
2020 (1)
2017 (1)
2015 (1)

Modelling Approach

Other (1)

Lab affiliation

Aarhus University Department of Biomedicine DK-8000 Aarhus C (4)
Vanderbilt University Proteomics Core (4)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (3)
Vanderbilt University (3)
Tianjin Medical University General Hospital (2)
Vanderbilt University, Proteomics Core (2)
1Institute of Sports Medicine Copenhagen, Department of Orthopedic Surgery, Copenhagen University Hospital – Bispebjerg and Frederiksberg; Copenhagen, Denmark 2Department of Clinical Medicine, University of Copenhagen; Denmark (1)
Aarhus University Department of Biomedicine DK-8000 Aarhus C (lab head) (1)
Academia Sinica (1)
Cambridge Institute for Medical Research (1)
Cantonal Hospital St. Gallen, Switzerland (1)
Chinese Academy of Inspection and Quarantine (1)
DZNE Munich Neuroproteomics Feodor-Lynen-Str. 17 81377 München Germany (1)
Department of Cellular Biology and Pathology, Instituto de Neurociencias de Castilla y León (INCyL), Laboratory Nº12 (1)
Department of Chemical Engineering, The University of Melbourne, Parkville, Victoria 3010, Australia (1)
Department of Pathology and Laboratory Medicine,University of Pennsylvania Perelman School of Medicine, Philadelphia, PA USA Division of Cancer Pathobiology,Children's Hospital of Philadelphia, Philadelphia, PA USA (1)
Discovery Proteomics, Genentech (1)
Division of Neuroscience, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester, M13 9PT, UK. Geoffrey Jefferson Brain Research Centre, The Manchester Academic Health Science Centre, Northern Care Alliance NHS Group, University of Manchester, Manchester, M13 9PT, UK. The Lydia Becker Institute of Immunology and Inflammation, University of Manchester, Manchester, M13 9PT, UK. (1)
ETH Zurich (1)
Experimental Hematology, University Medical Center Groningen, University of Groningen, The Netherlands (1)
Genentech, Inc. (1)
Helmholtz Centre for Environmental Research, UFZ (1)
Henan Agricultural University (1)
IRIC-Université de Montréal (1)
Infection Biology (1)
Institute of Biochemistry, Christian-Albrechts-University Kiel, Kiel, Germany (1)
Institute of Molecular Plant Biology (IMPB), Department of Biology, ETH Zurich (1)
Liverpool School of Tropical Medicine Pembroke Place Liverpool L3 5QA UK (1)
MiNA Therapeutics, United Kingdom (1)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen (1)

IsPrivate

False (1)

Submitter Keywords

Machine Learning Model (1)

Classification

bacteria (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (110)
RNA-seq of coding RNA (14)
RNA-seq of non coding RNA (6)
Comparative genomic hybridization by array (4)
Other (3)
Unknown experiment type (2)
Animal - One-color microarray (2)
Animal - High-throughput sequencing (2)
DNA-seq (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of total RNA (2)
Transcription profiling by SAGE (1)
Baseline (1)
Cell line - One-color microarray (1)
Whole chromosome random sequencing (1)
ChIP-chip by array (1)
ATAC-seq (1)
ChIP-seq (1)

Release Date

2025 (531)
2022 (415)
2021 (385)
2023 (369)
2024 (330)
2020 (253)
2018 (217)
2019 (203)
2016 (168)
2017 (156)
2014 (130)
2015 (129)
2012 (102)
2011 (82)
2026 (76)
2013 (74)
2010 (49)
2009 (30)
2008 (20)
2005 (12)
2007 (9)
2006 (9)
2003 (7)
2004 (5)
2000 (4)
1998 (3)
2001 (2)
1999 (2)
2002 (1)

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Chloroplast-dependent programmed cell death is activated in Arabidopsis cell cultures after singlet oxygen production by Rose Bengal

Arabidopsis thaliana cell suspension cultures (ACSC) were subjected to 30-min, mild chemical treatments with three different singlet oxygen elicitors at low-medium light conditions (150 µE m–2 s–1) with the aim of getting a better understanding of singlet oxygen-mediated defence responses in plants....

ORGANISM(S): Arabidopsis thaliana

2014-03-13 | E-GEOD-43551 | biostudies-arrayexpress

Hierarchical regulation in a KRAS pathway-dependent transcriptional network revealed by a reverse-engineering approach (RAS-ROSE and ROSE with siRNA)

RAS mutations are highly relevant for progression and therapy response of human tumours, but the genetic network that ultimately executes the oncogenic effects is poorly understood. Here we used a reverse-engineering approach in an ovarian cancer model to reconstruct KRAS oncogene-dependent cytoplas...

ORGANISM(S): Rattus norvegicus

2012-07-31 | E-GEOD-38585 | biostudies-arrayexpress

Col_Rose Bengal versus lox1lox5_Rose Bengal

Rose Bengal-treated wild type seedlings versus Rose Bengal-treated lox1lox5 mutant

ORGANISM(S): Arabidopsis thaliana

2011-03-01 | E-MEXP-3010 | biostudies-arrayexpress

Transcriptional control of blooming in rose by vernalisation in R. x wichurana, a once-flowering rose.

Vernalisation of control of blooming in rose

PRJEB95816 | ENA

Col_Rose Bengal versus eto1-14_Rose Bengal

Rose Bengal-treated wild-type seedlings versus Rose Bengal-treated eto1-14 mutant

ORGANISM(S): Arabidopsis thaliana

2011-03-01 | E-MEXP-3011 | biostudies-arrayexpress

affy_floral_rose-Study of floral initiation and recurrent blooming in rose

affy_floralangers_rose - affy_floral_rose - - Which genes are induced during floral initiation? - Are the genes involved in floral initiation identical between our 3 genotypes? - Which genes are involved in the control of recurrent blooming in rose? - Which genes are diferentially expressed between ...

ORGANISM(S): Rosa luciae

2011-08-31 | E-GEOD-17370 | biostudies-arrayexpress

Genome-Wide Identification of the Rose SWEET Gene Family and Their Different Expression Profiles in Cold Response between Two Rose Species.

Not available

S-EPMC10096651 | biostudies-literature

Col versus Col_Rose Bengal

MS treated wild-type Arabidopsis seedlings versus MS Rose Bengal (RB)-containing medium (10 microM) wild type treated seedlings

ORGANISM(S): Arabidopsis thaliana

2011-03-01 | E-MEXP-3009 | biostudies-arrayexpress

SIRT1 prevents R-loops during chronological aging by modulating DNA replication at rDNA loci

In metazoans, the largest sirtuin, SIRT1, is a nuclear protein implicated in epigenetic modifications, circadian signaling, DNA recombination, replication and repair. Our previous studies have demonstrated that SIRT1 binds replication origins and inhibits replication initiation from a group of poten...

ORGANISM(S): Homo sapiens

2023-11-27 | GSE247469 | GEO

SIRT1 prevents R-loops during chronological aging by modulating DNA replication at rDNA loci

PRJNA1038741 | ENA

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