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ProteomicsA quantitative model for macrophage activation predicts tunable distance thresholds for propagation of inflammationes in response LPS stimulation
Label free analysis of the secretome of RAW264.7 murine macrophages in response to LPS stimulation.
ORGANISM(S): Mus musculus (Mouse) 
2015-11-30 | PXD001905 | Pride
Lps Raw264.7 murine macrophages Label free Secretome 
TranscriptomicsRIP-seq of Saccharomyces cerevisiae to identify RNAs which associate with members of the closed loop complex (eIF4E, eIF4GI, eIF4GII, Pab1p) and inhibtors of the complex (Caf20p, Eap1p)
The aim of this experiment was to look at RNAs which associate with members of the closed loop complex (eIF4E, eIF4GI, eIF4GII, Pab1p) and inhibtors of the complex (Caf20p, Eap1p) under optimal growth conditions in the Saccharomyces cerevisiae BY4741 strain background. NOTE: The csfasta and qual...
ORGANISM(S): Saccharomyces Cerevisiae 
2014-08-01 | E-MTAB-2464 | biostudies-arrayexpress
OtherThe yeast La related protein Slf1p is a key activator of translation during the oxidative stress response.
Data from ProteomeXchange, PXD ID: PXD000887. File: 20131025_GP_CK_S2_1in10_01.mzml. Published as part of PLoS Genet. 2015 Jan 8;11(1):e1004903 . From the Abstract: {{i}} The mechanisms by which RNA-binding proteins control the translation of subsets of mRNAs are not yet clear. Slf1p and Sro9p are ...
ORGANISM(S): Yeast 
GPM32310018418 | GPMDB
Resource Reanalysis 
TranscriptomicsAnalysis of the role of yeast Sro9p in controlling the translation of specific mRNAs
The mechanisms by which RNA-binding proteins control the translation of subsets of mRNAs are not yet clear. Sro9p is an atypical La motif containing protein (LARP). LARPs are members of a superfamily of RNA-binding proteins conserved across eukaryotes. We performed transcriptomics and RIP-Seq analys...
ORGANISM(S): Saccharomyces cerevisiae 
2015-05-01 | E-MTAB-2568 | biostudies-arrayexpress
TranscriptomicsAnalysis of the role of yeast Slf1p in translation of specific mRNAs during oxidative stress response
The mechanisms by which RNA-binding proteins control the translation of subsets of mRNAs are not yet clear. Slf1p is an atypical La motif containing protein (LARP). LARPs are members of a superfamily of RNA-binding proteins conserved across eukaryotes. We performed transcriptomics and RIP-Seq analys...
ORGANISM(S): Saccharomyces cerevisiae 
2015-05-01 | E-MTAB-2567 | biostudies-arrayexpress
UnknownNeuronal intranuclear inclusion disease is genetically heterogeneous.
Not available
S-EPMC7480908 | biostudies-literature
UnknownInterferon-α-mediated therapeutic resistance in early rheumatoid arthritis implicates epigenetic reprogramming.
Not available
S-EPMC9380486 | biostudies-literature
GenomicsEGAS00001000262-sc-20170314 - samples
Whole Genome Sequencing Illumina HiSeq data from 111 men with prostate cancer. Samples were taken from primary tissue obtained at prostatectomy (target sequencing depth 50X) with matched blood control (target sequencing depth 30X). This data is from batches 4 to 6.
EGAD00001003225 | EGA
GenomicsThe Natural History of Human Prostate Cancer - samples
Affymetrix SNP6.0 genotype data for prostate cancer patients
EGAD00010000498 | EGA
GenomicsEGAS00001000262-sc-20160408 - samples
To characterize the subclonal genomic architecture of non-androgen-deprived metastatic prostate cancer, we performed whole-genome sequencing (WGS) of pelvic lymph node metastases and matching noncancerous blood from 10 patients to an average sequencing depth of 55x. The patients are part of PELICAN ...
EGAD00001002002 | EGA
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