Rpmi - OmicsDI

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Transcriptomics (4569)
Genomics (1688)
Proteomics (651)
Unknown (425)
Metabolomics (102)
Other (14)
Methylation profiling (3)
Models (2)

Organisms

Homo sapiens (3778)
Mus musculus (963)
Rattus norvegicus (55)
Plasmodium falciparum (37)
Bos taurus (25)
Candida albicans (25)
Gallus gallus (22)
Sus scrofa (20)
Staphylococcus aureus (16)
Aspergillus fumigatus (13)
Plasmodium falciparum 3D7 (11)
Canis lupus familiaris (10)
Brugia malayi (5)
Pan troglodytes (5)
Brucella canis (4)
Schistosoma mansoni (4)
Mycobacterium tuberculosis (4)
Coxiella burnetii (4)
Saccharomyces cerevisiae (4)
Leishmania donovani (3)
Danio rerio (3)
Macaca mulatta (3)
Streptococcus suis 05ZYH33 (2)
Mycobacterium avium subsp. paratuberculosis (2)
Plasmodium yoelii (2)
Haemophilus influenzae (2)
Brugia pahangi (2)
Plasmodium berghei (2)
Xenopus laevis (2)
Macaca fascicularis (2)

Organisms

Homo sapiens (691)
Mus musculus (266)
Candida albicans (15)
Bos taurus (10)
Rattus norvegicus (8)
Nakaseomyces glabratus (6)
Sus scrofa (6)
Staphylococcus aureus (6)
Aspergillus fumigatus (4)
Gallus gallus (4)
Candida albicans SC5314 (3)
Candidozyma auris (3)
Madurella mycetomatis (2)
Cryptococcus neoformans H99 (2)
Neisseria meningitidis (2)
Mus (2)
Macaca mulatta (2)
Pseudomonas aeruginosa PAO1 (2)
Escherichia coli (2)
Pneumocystis carinii (1)
Escherichia coli 536 (1)
Talaromyces marneffei (1)
Trichophyton rubrum (1)
Porphyromonas gingivalis (1)
Candida tropicalis (1)
Cricetulus griseus (1)
Mycobacterium avium subsp. hominissuis (1)
Pseudomonas aeruginosa UCBPP-PA14 (1)
Chlorocebus aethiops (1)
Sus scrofa scrofa (1)

Repository

biostudies-arrayexpress (4872)
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pride (621)
geo (231)
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GNPS (26)
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EGA (8)
NODE (5)
iProX (3)
jPOST (3)
BioModels (2)
GPMDB (2)
MetabolomicsWorkbench (2)
ExpressionAtlas (1)

Tissue

Cell culture (224)
T cell (54)
Epithelial cell (51)
Blood (49)
B cell (37)
Blood cell (37)
Macrophage (35)
Cell suspension culture (31)
Fibroblast (28)
Monocyte (28)
Lung (27)
Permanent cell line cell (27)
Skin (14)
JURKAT cell (12)
Primary cell (12)
Leukocyte (11)
Bone marrow (10)
Melanocyte (9)
Neutrophil (8)
Dendritic cell (7)
Spleen (7)
Blood plasma (6)
Lymph node (6)
Colon (5)
Cultured cells (2)
Human intrahepatic cholangiocarcarcinoma cell line (1)
Large intestine (1)
Marrow (1)
Pancreas (1)
Small intestine (1)

Disease

Breast cancer (38)
Colon cancer (24)
Normal (22)
Lymphoma (21)
Multiple myeloma (13)
Chronic myeloid leukemia (9)
Neuroblastoma (6)
Prostate cancer (6)
Benign prostatic hyperplasia (3)
Cancer (3)
Acute promyelocytic leukemia (3)
Adenocarcinoma (3)
Erythroleukemia (2)
HHV-6B infected (2)
Malignant melanoma (2)
Squamous cell carcinoma (2)
Leukemia (2)
Chronic myelogenous leukemia (2)
No disease (2)
Hepatocellular carcinoma (2)
Breast carcinoma (2)
FRD1234 (1)
Vitamin B12 deficiency (1)
Measles virus infected (1)
Perineural invasion (1)
Anaplastic large cell lymphoma has DiseaseStaging II (1)
Malignant mesothelioma (1)
Autoimmune disorder (1)
Waldenstrom Macroglobulinemia (1)
Myelogenous leukaemia (1)

Technology Type

Mass Spectrometry (623)
Shotgun proteomics (375)
Bottom-up proteomics (110)
Data-dependent acquisition (55)
Affinity purification coupled with mass spectrometry proteomics (54)
Mass spectrometry (49)
Data-independent acquisition (34)
Gel-based experiment (33)
SWATH MS (26)
Mass spectrometry assay (18)
Top-down proteomics (11)
NMR spectroscopy (6)
All-ion fragmentation (6)
DiaPASEF (5)
Immunopeptidomics (5)
SRM/MRM (5)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
ESI (2)
MSE (2)
NMR spectroscopy assay (1)
Proteogenomics (1)
RNA mass spectrometry (1)

Instrument Platform

Illumina NovaSeq 6000 (161)
NextSeq 500 (102)
Illumina HiSeq 4000 (90)
Illumina HiSeq 2500 (74)
Illumina HiSeq 2000 (73)
NextSeq 550 (32)
Illumina NovaSeq X (22)
Illumina HiSeq 1500 (17)
Illumina Genome Analyzer IIx (14)
Illumina MiSeq (12)
NextSeq 2000 (11)
Axon GenePix 4000B scanning hardware (7)
10x Genomics Chromium Controller (7)
DNBSEQ-G400 (7)
Illumina HiSeq 3000 (6)
Agilent G2565AA and G2565BA Microarray Scanner (5)
G2565BA DNA microarray scanner [Agilent] (5)
Illumina Genome Analyzer II (4)
Illumina HiSeq 1000 (4)
BGISEQ-500 (4)
10x Genomics Chromium (3)
ScanArray Express HT (3)
Scanning hardware (3)
NA (3)
N/A (3)
BD Influx sorter (2)
Agilent Bravo NGS workstation, Microlab STAR automated liquid handler (Hamilton Robotics), PCR machine (MJ Research Peltier Thermal Cycler) (2)
BD Rhapsody (2)
MA900, Sony (2)
10x Chromium Controller (2)

Publication Date

2014 (635)
2015 (586)
2013 (557)
2012 (523)
2016 (466)
2011 (446)
2010 (434)
2009 (213)
2008 (212)
2023 (201)
2025 (189)
2026 (175)
2022 (169)
2024 (168)
2020 (164)
2021 (163)
2018 (136)
2019 (127)
2017 (107)
2007 (60)
2006 (47)
2005 (38)
2004 (22)
2003 (5)
2002 (2)

CHEBI ID

CHEBI:17568 (30)
CHEBI:16704 (29)
CHEBI:18012 (29)
CHEBI:30769 (28)
CHEBI:15428 (27)
CHEBI:15891 (27)
CHEBI:16856 (26)
CHEBI:16027 (26)
CHEBI:17368 (26)
CHEBI:16708 (25)
CHEBI:30915 (25)
CHEBI:6650 (24)
CHEBI:16335 (24)
CHEBI:32816 (24)
CHEBI:17562 (23)
CHEBI:17268 (23)
CHEBI:16761 (23)
CHEBI:17596 (23)
CHEBI:16264 (22)
CHEBI:16695 (22)
CHEBI:16750 (22)
CHEBI:17361 (22)
CHEBI:15741 (22)
CHEBI:16865 (22)
CHEBI:15422 (22)
CHEBI:16908 (22)
CHEBI:17154 (21)
CHEBI:17895 (21)
CHEBI:17295 (21)
CHEBI:17659 (20)

Metabolite Name

Taurine (19)
Uracil (18)
Glutathione (18)
ADP (17)
L-Phenylalanine (17)
L-Proline (15)
Adenine (15)
Uridine (15)
Hypoxanthine (15)
NADH (14)
L-Valine (14)
Glycine (13)
Pantothenic acid (13)
L-Histidine (13)
Adenosine (13)
L-Serine (13)
L-Isoleucine (13)
L-Methionine (13)
L-Tyrosine (13)
L-Alanine (12)
L-Aspartic acid (12)
NADPH (12)
Benzoic acid (12)
L-Asparagine (12)
L-Threonine (12)
Citric acid (12)
Myo-Inositol (12)
L-Leucine (12)
Inosine (12)
L-Lysine (11)

IsPrivate

False (2)

First Public Date

2014 (229)
2025 (155)
2024 (144)
2023 (111)
2026 (107)
2022 (94)
2021 (73)
2020 (68)
2019 (57)
2018 (44)
2015 (39)
2017 (26)
2016 (20)
2013 (13)

Classification

fungi (38)
bacteria (21)
helminths (1)
protozoa (1)

Modelling Approach

Constraint-based model (2)

Modification

4x(15)N labeled L-arginine (10)
2x(15)N labeled L-lysine (9)
4 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(2)H labeled dimethylated residue (1)
N6 (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

Transcription profiling by array (2980)
RNA-seq of coding RNA (589)
ChIP-seq (438)
RNA-seq of coding RNA from single cells (159)
Other (80)
Comparative genomic hybridization by array (60)
Methylation profiling by array (60)
RNA-seq of non coding RNA (50)
ChIP-chip by tiling array (49)
ChIP-chip by array (37)
RNA-seq of total RNA (37)
MicroRNA profiling by array (31)
Unknown experiment type (25)
Methylation profiling by high throughput sequencing (23)
Transcription profiling by RT-PCR (22)
RNAi profiling by array (20)
Genotyping by array (20)
ATAC-seq (18)
Cell line - High-throughput sequencing (17)
Transcription profiling by tiling array (14)
DNA-seq (14)
Human - High-throughput sequencing (11)
Animal - High-throughput sequencing (11)
Proteomic profiling by array (10)
Cell line - One-color microarray (8)
Transcription profiling by SAGE (7)
RIP-seq (5)
High-throughput sequencing (4)
Human - One-color microarray (4)
MicroRNA profiling by high throughput sequencing (4)

Release Date

2014 (642)
2015 (582)
2013 (560)
2012 (524)
2016 (472)
2011 (448)
2010 (431)
2009 (214)
2008 (211)
2023 (132)
2022 (128)
2020 (120)
2025 (119)
2021 (115)
2024 (112)
2018 (90)
2026 (86)
2017 (85)
2019 (75)
2007 (58)
2006 (44)
2005 (29)
2004 (17)
2003 (2)
2002 (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (21)
Bioplatforms Australia (9)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (5)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (4)
Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (4)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (4)
Head of the Curie Institute Mass Spectrometry Platform (4)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (4)
Breast Cancer Now The Institute of Cancer Research (3)
GlycoProteomics Laboratory, Department of Parasitology, Institute of Biomedical Sciences, University of Sao Paulo, Avenida Lineu Prestes 1374, CEP 05508-000, Sao Paulo, Brazil (3)
Head of System Biology Lab. at Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (3)
Massachusetts Institute of Technology (3)
Moffitt Cancer Center (3)
National Engineering Research Center for the Emergency Drug, Beijing Institute of Pharmacology and Toxicology, Beijing 100850, China (3)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (3)
Systems Inflammation group, Centre of Molecular Inflammation Research (CEMIR), and Department of Clinical and Molecular Medicine (IKOM), Norwegian University of Science and Technology, Norway (3)
1School of Natural Sciences, Macquarie University, Sydney, NSW, Australia 2Institute for Glyco-core Research (iGCORE), Nagoya University, Aichi, Japan (2)
Cancer Research UK Beatson Institute, Glasgow, UK (2)
Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK (2)
Chair, Quantitative Proteomics Director, Proteome Center Tuebingen Interfaculty Institute for Cell Biology University of Tuebingen Auf der Morgenstelle 15 72076 Tuebingen Germany (2)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (2)
Department of Chemistry and Biochemistry. University of Colorado, Boulder. Boulder, CO 80303 (2)
Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), PO Box 8905, N-7491, Trondheim, Norway Phone: +47 72573075, Fax: +47 72576400 (2)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States (2)
Department of Laboratory Medicine, Wiita Lab, University of California, San Francisco, USA (2)
Department of Molecular Microbiology & Immunology Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (2)
Department of Molecular Pathology and Biology Faculty of Military Health Sciences, University of Defence Trebesska 1575, 50001 Hradec Kralove, Czech Republic (2)
Div. Clinical Protein Science and Imaging, Dept. of Clinical Sciences and Dept. of Biomedical Engineering, Lund University, Sweden (2)
Division of Cell Signalling and Immunology School of Life Sciences University of Dundee Dundee (2)
EPFL (2)

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Expression data analysis from RPMI 8226 cells irraidated to C-ions.

Multiple Myeloma (MM) is an hematological malignancy. MM cells are resistant to X-ray irradiations. We irradiated RPMI 8226 cancer cells with C-ions, which are more energetic than X-ray irradiations. We found that MM cells, RPMI 8226, are also resistant to C-ion irradiations. We used microarrays to ...

ORGANISM(S): Homo sapiens

2016-01-05 | E-GEOD-76471 | biostudies-arrayexpress

TAL1 complex in human T-cell acute lymphoblastic leukemia (RPMI-8402)

The oncogenic transcription factor TAL1/SCL is aberrantly overexpressed in over 40% of cases of T-cell acute lymphoblastic leukemia (T-ALL), emphasizing the importance of the TAL1-regulated transcriptional program in the molecular pathogenesis of T-ALL. Here we identify regions occupied by TAL1 and ...

ORGANISM(S): Homo sapiens

2012-07-09 | E-GEOD-39179 | biostudies-arrayexpress

The melanoma cell line RPMI-7951 adhesome in long-term culture and its comparison to the adhesome upon integrin αV knockdown

Integrins are involved in the metastatic cascade and have been found to be responsible for intrinsic and acquired therapy resistance. Therefore, targeting integrins, or more specifically the signal transduction via integrin adhesion complexes (IACs), is a promising therapeutic opportunity to reduce ...

ORGANISM(S): Homo sapiens (Human)

2026-04-27 | PXD064756 | Pride

RNA-seq analysis in RPMI-8402 cells after knockout of MYC

PRJNA970307 | ENA

RNA-seq analysis in RPMI-8402 cells after knockout of MYCN

PRJNA970308 | ENA

RUNX1 IP-MS on RPMI-8402 NKX2-1 +/+ and -/-

Unravel the binding partners of RUNX1 transcription factor in RPMI-8402 NKX2-1 +/+ and NKX2-1 -/-.

ORGANISM(S): Homo sapiens (Human)

2025-12-15 | PXD057654 | Pride