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TranscriptomicsMAGE-seq E. coli primary sigma factor RpoD amplicon high-throughput genotyping
Genotyping of RpoD mutants via amplicon sequencing from the following manuscript: \\"Systematic dissection of σ70 sequence diversity and function in bacteria\\" by Park and Wang (2020). Includes raw sequencing reads from samples from MAGE-seq single codon saturation mutagenesis and high-throughput f...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2022-06-06 | E-MTAB-9103 | biostudies-arrayexpress
TranscriptomicsChIP-chip of Geobacter sulfurreducens PCA with antibody against RNAP and RpoD under various conditions
We applied a ChIP-chip approach to elucidate the binding profiles of RNAP and RpoD experimentally under different growth conditions. This technique localizes DNA fragments within DNA-protein complexes enriched by chromatin immunoprecipitation using high-density oligonucleotide tilling arrays. A 21 C...
ORGANISM(S): Geobacter sulfurreducens PCA 
2010-07-01 | E-GEOD-22503 | biostudies-arrayexpress
GenomicsRNA-seq of RpoD ortholog mutants from X manuscript
RNA-seq of RpoD ortholog mutants from X manuscript
PRJEB38413 | ENA
UnknownImportance of RpoD- and Non-RpoD-Dependent Expression of Horizontally Acquired Genes in Cupriavidus metallidurans.
Not available
S-EPMC9045368 | biostudies-literature
GenomicsMetagenomic regulatory sequence library characterized in RpoD ortholog strains
Metagenomic regulatory sequence library characterized in RpoD ortholog strains
PRJEB38453 | ENA
TranscriptomicsChIP-chip of RNA Polymerase (RNAP) and RpoD in Salmonella enterica serovar Typhimurium strain SL1344
ChIP-on-chip analysis of RNAP and RpoD binding to the Salmonella enterica serovar Typhimurium chromosome demonstrated a high degree of overlap between RNAP and RpoD binding and provided us with important insights into the global distribution of these factors. Furthermore this data was correlated wit...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium 
2012-02-16 | E-GEOD-35827 | biostudies-arrayexpress
GenomicsMAGE-seq E. coli primary sigma factor RpoD amplicon high-throughput genotyping
MAGE-seq E. coli primary sigma factor RpoD amplicon high-throughput genotyping
PRJEB38418 | ENA
GenomicsMetabarcoding analysis of the rpoD gene sequence of the genus Pseudomonas from the wheat rhizospheres from serbian soils
Metabarcoding analysis of the rpoD gene sequence from serbian soil samples
PRJEB61430 | ENA
GenomicsMetabarcoding analysis of the rpoD gene sequence from serbian soil samples
Metabarcoding analysis of the rpoD gene sequence of the genus Pseudomonas from the wheat rhizospheres from serbian soils
PRJEB61447 | ENA
TranscriptomicsExpression profiling of E. coli expressing the heterologous sigma70 factor (rpoD) of Lactobacillus plantarum
Time course experiment to analyze transcriptional changes to the E. coli transcriptome due to overexpressing the heterologous sigma70 factor (RpoD) of Lactobacillus plantarum. A plasmid control strain (pControl) and the sigma70 overexpression strain (pLPLσ) were cultivated in parallel and after indu...
ORGANISM(S): Escherichia coli O157:H7 str. EDL933 Escherichia coli str. K-12 substr. MG1655 Escherichia coli Escherichia coli CFT073 Escherichia coli O157:H7 str. Sakai 
2015-03-18 | GSE66995 | GEO
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