Ru F F - OmicsDI

Show results for

Unknown (1027)
Proteomics (53)
Transcriptomics (39)
Genomics (4)
Metabolomics (4)
Models (1)

Organisms

Homo sapiens (44)
Mus musculus (24)
Caenorhabditis elegans (2)
Chlamydomonas priscui (2)
Sus scrofa domesticus (2)
Macaca mulatta (1)
Macaca fascicularis (1)
Gallus gallus (1)
Arabidopsis thaliana (1)
Mangifera indica (1)
Pseudoalteromonas sp. A3 (1)
Rattus norvegicus (1)
African swine fever virus (1)
Chlamydomonas reinhardtii (1)
Clostridioides difficile 630 (1)
Desulfatiglans sp. (1)
Geobacillus thermodenitrificans (1)
Phytophthora sojae (1)
Treponema (1)
uncultured Desulfatiglans sp. (1)
uncultured Desulfobacterium sp. (1)

Repository

biostudies-arrayexpress (43)
pride (35)
iProX (9)
MassIVE (7)
MetabolomicsWorkbench (2)
Cell Collective (1)
GNPS (1)
jPOST (1)
MetaboLights (1)
PAXDB (1)

Tissue

Cell culture (9)
Blood (6)
Kidney (4)
Mucosal invariant T cell (4)
Urine (4)
Epithelial cell (3)
Monocyte (3)
Blood cell (2)
Brain (2)
T cell (2)
Epithelial cells (1)
Feces (1)
B cell (1)
Bone marrow (1)
HeLa cell (1)
Macrophage (1)
Mycelium (1)
Permanent cell line cell (1)
Primary cell (1)

Disease

T-cell acute lymphoblastic leukemia (1)
Cancer (1)
Irritable bowel syndrome (1)
Acute leukemia (1)
Brain cancer (1)
Cervix carcinoma (1)
Colon cancer (1)
Colorectal cancer (1)
Disease free (1)
Glioblastoma (1)

Technology Type

Mass Spectrometry (37)
Shotgun proteomics (26)
Bottom-up proteomics (4)
ESI (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
Mass spectrometry (1)
Data-independent acquisition (1)
Gel-based experiment (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
LTQ XL (2)
LTQ (2)
Q Exactive (2)
Performed by Novogene; Illumina library preparation instrumentation (provider standard) (1)
Chromatin IP kit (1)
Immunomagnetic separation system (e.g., Miltenyi MACS separator), Tissue culture facilities (biosafety cabinet, CO₂ incubator) , Bench centrifuge (1)
Novogene in-house automated library preparation system (1)
GeneChip Scanner 3000 7G (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Fusion (1)
Flow injection analysis MS - negative (1)

Publication Date

2023 (16)
2010 (10)
2018 (9)
2025 (8)
2026 (7)
2021 (6)
2019 (5)
2014 (5)
2024 (4)
2017 (4)
2013 (4)
2020 (4)
2015 (3)
2008 (3)
2022 (3)
2012 (2)
2011 (2)
2009 (1)

UNIPROT ID/AC

1433B_MOUSE (1)
1433E_MOUSE (1)
1433F_MOUSE (1)
1433G_MOUSE (1)
1433T_MOUSE (1)
1433Z_MOUSE (1)
2A5A_MOUSE (1)
2A5E_MOUSE (1)
2A5G_MOUSE (1)
2AAA_MOUSE (1)
2ABA_MOUSE (1)
3HIDH_MOUSE (1)
4F2_MOUSE (1)
6PGD_MOUSE (1)
6PGL_MOUSE (1)
AAK1_MOUSE (1)
AATC_MOUSE (1)
AATM_MOUSE (1)
ABCB7_MOUSE (1)
ABCE1_MOUSE (1)
ABD12_MOUSE (1)
ABHD6_MOUSE (1)
ABI1_MOUSE (1)
ABLM1_MOUSE (1)
ABLM2_MOUSE (1)
ABR_MOUSE (1)
ACACA_MOUSE (1)
ACAD9_MOUSE (1)
ACADL_MOUSE (1)
ACADM_MOUSE (1)

CHEBI ID

CHEBI:102524; HMDB0014386; HMDB14386 (1)
CHEBI:1050862; HMDB0013696; HMDB0032997; HMDB0032999; HMDB13696; HMDB32997; HMDB32999 (1)
CHEBI:10979; HMDB0032418; HMDB0032422; HMDB32418; HMDB32422 (1)
CHEBI:110179; CHEBI:132606; HMDB0030767; HMDB0037774; HMDB0037775; HMDB0094645; HMDB30767; HMDB37774; HMDB37775; HMDB94645 (1)
CHEBI:1178473; HMDB0031339; HMDB0032968; HMDB0032969; HMDB0032970; HMDB31339; HMDB32968; HMDB32969; HMDB32970 (1)
CHEBI:132607; HMDB0030555; HMDB0094679; HMDB30555; HMDB94679 (1)
CHEBI:132854; HMDB0032662; HMDB0036029; HMDB0037179; HMDB32662; HMDB36029; HMDB37179 (1)
CHEBI:133460; HMDB0060013; HMDB60013 (1)
CHEBI:133815; HMDB0030856; HMDB0040140; HMDB30856; HMDB40140 (1)
CHEBI:167099; HMDB0034413; HMDB0040578; HMDB34413; HMDB40578 (1)
CHEBI:17976; HMDB0033197; HMDB0036047; HMDB0059661; HMDB33197; HMDB36047; HMDB59661 (1)
CHEBI:20607; HMDB0000982; HMDB0039229; HMDB00982; HMDB39229 (1)
CHEBI:239286; HMDB0015200; HMDB15200 (1)
CHEBI:246417; HMDB0029717; HMDB29717 (1)
CHEBI:256036; HMDB0029742; HMDB0031860; HMDB0032933; HMDB29742; HMDB31860; HMDB32933 (1)
CHEBI:26308; CHEBI:87281; CHEBI:87503; HMDB0031717; HMDB0032271; HMDB0032410; HMDB0032495; HMDB0036193; HMDB0037619; HMDB0038299; HMDB0039653; HMDB0040413; HMDB0041306; HMDB31717; HMDB32271; HMDB32410; HMDB32495; HMDB36193; HMDB37619; HMDB38299; HMDB39653; HMDB40413; HMDB41306 (1)
CHEBI:3395; CHEBI:73508; HMDB0014336; HMDB0028827; HMDB0028864; HMDB0029157; HMDB0029439; HMDB14336; HMDB28827; HMDB28864; HMDB29157; HMDB29439 (1)
CHEBI:356329; CHEBI:356660; HMDB0000721; HMDB0011178; HMDB00721; HMDB11178 (1)
CHEBI:356659; HMDB0011174; HMDB0011175; HMDB0028915; HMDB0028937; HMDB11174; HMDB11175; HMDB28915; HMDB28937 (1)
CHEBI:37270; HMDB0010730; HMDB0030982; HMDB0032370; HMDB10730; HMDB30982; HMDB32370 (1)
CHEBI:385866; HMDB0000706; HMDB0011167; HMDB0028760; HMDB0028991; HMDB00706; HMDB06113; HMDB11167; HMDB28760; HMDB28991 (1)
CHEBI:417823; HMDB0030965; HMDB0037517; HMDB30965; HMDB37517 (1)
CHEBI:42334; HMDB0062295; HMDB62295 (1)
CHEBI:43355; HMDB0000682; HMDB00682; HMDB03309 (1)
CHEBI:479286; HMDB0013631; HMDB13631 (1)
CHEBI:479320; HMDB0013308; HMDB0062338; HMDB13308; HMDB62338 (1)
CHEBI:48498; HMDB0029726; HMDB0033746; HMDB29726; HMDB33746 (1)
CHEBI:48983; HMDB0032717; HMDB0033437; HMDB32717; HMDB33437 (1)
CHEBI:50091; HMDB0004645; HMDB04645 (1)
CHEBI:51041; HMDB0014797; HMDB14797 (1)

Metabolite Name

(+)-(1R,2R)-1,2-Diphenylethane-1,2-diol (1)
(+/-)-6-Acetonyldihydrochelerythrine (1)
(-)-Nopol (1)
(-)-trans-Carveol (1)
(10S,11S)-Pterosin C (1)
(1E,3E)-4-Hydroxybuta-1,3-diene-1,2,4-tricarboxylate (1)
(2-hydroxy-2-{9-hydroxy-7-oxo-2H,3H,7H-furo[3,2-g]chromen-2-yl}propoxy)sulf... (1)
(22Alpha)-hydroxy-campest-4-en-3-one (1)
(3''x,5''a,9''x,10''b)-O-(3-Hydroxy-6-oxo-7-drimen-11-yl)umbelliferone (1)
(3R,7R)-1,3,7-Octanetriol (1)
(3S,5R,6S,7E,9x)-7-Megastigmene-3,6,9-triol 9-glucoside (1)
(3S,7E,9R)-4,7-Megastigmadiene-3,9-diol 9-[apiosyl-(1->6)-glucoside] (1)
(3Z,6Z)-3,6-Nonadien-1-ol (1)
(3beta,22E)-26,27-Dinorergosta-5,22-dien-3-ol (1)
(4-{3-[2,4-dihydroxy-5-(3-methylbut-2-en-1-yl)phenyl]-2-hydroxy-3-oxopropyl... (1)
(5-{4-[2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-3,4-dihydro-2H-1-benzopyran... (1)
(7''R,8''R)-4,7''-Epoxy-3''-methoxy-4'',5,9,9''-lignanetetrol 9''-glucoside (1)
(8E,15E)-1,8,15-Heptadecatriene-11,13-diyne (1)
(9Z,11E,13E,15Z)-4-Oxo-9,11,13,15-octadecatetraenoic acid (1)
(Ac)2-L-Lys-D-Ala (1)
(Iso)Citrate (1)
(Iso)Leucine (1)
(R)-1,3-Octanediol (1)
(R)-2-Benzylsuccinate (1)
(R)-2-Hydroxysterculic acid (1)
(R)-3-Hydroxy-5-phenylpentanoic acid (1)
(R)-3-Hydroxy-Octadecanoic acid (1)
(R)-6''-O-(4-Geranyloxy-2-hydroxycinnamoyl)-marmin (1)
(R)-Marmin (1)
(R)-Shinanolone (1)

Study type

Transcription profiling by array (32)
ChIP-seq (4)
RNA-seq of coding RNA from single cells (3)
RNA-seq of coding RNA (3)
ChIP-chip by tiling array (1)

Release Date

2022 (147)
2025 (135)
2024 (130)
2023 (127)
2021 (108)
2020 (76)
2019 (60)
2018 (55)
2016 (36)
2026 (29)
2017 (26)
2015 (26)
2014 (21)
2010 (19)
2013 (18)
2012 (18)
2011 (13)
2008 (11)
2009 (8)
2006 (3)
2005 (2)
2007 (1)
2003 (1)

Lab affiliation

Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (4)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (3)
Department II of Internal Medicine and Center for Molecular Medicine Cologne, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany CECAD, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany (2)
Head Proteomics Group, Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (2)
University Hospital Cologne (2)
1) Department II of Internal Medicine and Center for Molecular Medicine Cologne, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany 2) CECAD, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany (1)
CECAD-Cluster of Excellence, University of Cologne, Joseph-Stelzmann-Str. 26, D-50931, Cologne, Germany; Department II of Internal Medicine, Faculty of Medicine and University Hospital Cologne, University of Cologne, Kerpener Str. 62, D-50937, Cologne, Germany; Center for Molecular Medicine Cologne (CMMC), University of Cologne, Robert-Koch-Str. 21, D-50931, Cologne, Germany (1)
Center for Genomic Regulation, Universitat Pompeu Fabra (1)
Center for Proteomics and Metabolomics Leiden University Medical Center (1)
Center for Proteomics and Metabolomics, Leiden University Medical Center, Leiden, The Netherlands (1)
Center for Proteomics and Metabolomics, Leiden University Medical Center, The Netherlands (1)
Department II of Internal Medicine, University of Cologne, Faculty of Medicine and University Hospital Cologne, Germany (1)
Department of Neuro- and Sensory Physiology University Medical Center Göttingen Humboldtallee 23 37073 Göttingen (1)
Donald Danforth Plant Science Center, St. Louis, Missouri 63132 (1)
Forschungszentrum Juelich ZEA-3 Analytics (1)
IRCCS Ist. Gaslini (1)
Immune monitoring lab Department of Immunohematology and Blood transfusion Leiden University Medical Center (LUMC) The Netherlands (1)
Immune monitoring lab, Department of Immunology Leiden University Medical Center (LUMC) The Netherlands (1)
Lanzhou University (1)
Leiden University Medical Center |Center for Proteomics and Metabolomics | The Netherlands (1)
Max Planck Unit for the Science of Pathogens (1)
Nephrolab Department II of Internal Medicine, University of Cologne (1)
State Key Laboratory of Crop Stress Biology for Arid Areas, Key Laboratory of Plant Protection Resources and Pest Management of Ministry of Education, College of Plant Protection, Northwest A&F University, Yangling 712100, Shaanxi, China (1)
State Key Laboratory of Veterinary Etiological Biology, National Foot and Mouth Diseases Reference Laboratory, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences (1)
State Key Laboratory of Veterinary Etiological Biology, National Foot and Mouth Diseases Reference Laboratory,Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences (1)
University Hospital of Cologne Department II of Internal Medicine Nephrolab Cologne CECAD Research Center (1)
University of Sheffield (1)