Ryffel B B - OmicsDI

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Unknown (95)
Transcriptomics (14)
Metabolomics (11)
Proteomics (1)

Organisms

Mus musculus (7)
Homo sapiens (4)
Rattus norvegicus (3)

Repository

biostudies-arrayexpress (14)
MetaboLights (10)
GNPS (1)
pride (1)

Tissue

Cell culture (1)

Disease

Renal cell carcinoma (1)
Ovarian cancer (1)

Technology Type

Mass spectrometry (9)
Mass spectrometry assay (1)
Mass Spectrometry (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
LTQ Orbitrap Classic (Thermo Scientific) (2)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
LTQ FT (1)
MaXis (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)

Publication Date

2023 (8)
2007 (3)
2015 (3)
2016 (2)
2013 (2)
2011 (2)
2008 (2)
2022 (1)
2021 (1)
2010 (1)
2024 (1)

CHEBI ID

CHEBI:15422 (3)
CHEBI:16027 (3)
CHEBI:16077 (3)
CHEBI:16359 (3)
CHEBI:16761 (3)
CHEBI:28865 (3)
CHEBI:30769 (3)
CHEBI:35038 (3)
CHEBI:48928 (3)
CHEBI:139138 (2)
CHEBI:14314 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15351 (2)
CHEBI:15713 (2)
CHEBI:15721 (2)
CHEBI:15741 (2)
CHEBI:15996 (2)
CHEBI:16108 (2)
CHEBI:16264 (2)
CHEBI:16695 (2)
CHEBI:17013 (2)
CHEBI:17050 (2)
CHEBI:17052 (2)
CHEBI:17138 (2)
CHEBI:17345 (2)
CHEBI:173703 (2)
CHEBI:17533 (2)
CHEBI:17552 (2)
CHEBI:17659 (2)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
5'-Guanylic acid (2)
5'-Thymidylic acid (2)
5'-phosphoribosyl-N-formylglycinamide (2)
6-phosphogluconic acid (2)
9(10)-EpOME (2)
Adenosine diphosphate (2)
Adenosine triphosphate (2)
D-Fructose 1,6-bisphosphate (2)
D-Ribose 5-phosphate (2)
Elaidic acid (2)
Glucose-1-phosphate (2)
Guanosine 5'-diphosphate (2)
Guanosine triphosphate (2)
Lyso-PC(16:0) (2)
Monoolein (2)
N-Acetyl-D-glucosamine 1,6-bisphosphate (2)
N-Acetyl-L-glutamic acid (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
O-phospho-D-serine (2)
Ribose 1,5-bisphosphate (2)
SAICAR (2)
Sedoheptulose 7-phosphate (2)
UDP-GlcNAc (2)
UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine (2)

Study type

Transcription profiling by array (12)
RNA-seq of coding RNA from single cells (1)
RNA-seq of coding RNA (1)

Release Date

2018 (12)
2021 (11)
2016 (10)
2022 (9)
2017 (8)
2014 (7)
2013 (6)
2020 (6)
2011 (5)
2010 (5)
2007 (5)
2023 (4)
2019 (4)
2025 (3)
2024 (3)
2015 (3)
2012 (3)
2008 (2)
2009 (1)
2005 (1)
2003 (1)

Lab affiliation

Immunopathology of Virus Infections Institute of Virology Technical University of Munich (1)

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Bromodomain and extraterminal (BET) protein inhibition of IgG/IgE production in murine B cells is counter-balanced by a strong Th2 bias.

Not available

S-EPMC8164936 | biostudies-literature

Transcription profiling of human embryonic kidney cells HEK293 overexpressing the transcription factors HNF4a2 or mutant forms HNF4a2 C106R and HNF4a2 R154X to identify HNF4a regulated genes in kidney cells being several of these genes deregulated in renal cell carcinoma

Analysis of gene expression in human embryonic kidney cells HEK293 overexpressing the transcription factors HNF4a2 or mutant forms HNF4a2 C106R and HNF4a2 R154X, which were introduced by FRT/FLP recombination. The analysis was performed 24 hours following 1sg/ml tetracycline treatment to induce the ...

ORGANISM(S): Homo sapiens

2007-10-30 | E-GEOD-2700 | biostudies-arrayexpress

OspA heterogeneity of Borrelia valaisiana confirmed by phenotypic and genotypic analyses.

Not available

S-EPMC169163 | biostudies-literature

In Situ Characterization of Splenic Brucella melitensis Reservoir Cells during the Chronic Phase of Infection in Susceptible Mice.

Not available

S-EPMC4574346 | biostudies-literature

A New Bifidobacteria Expression SysTem (BEST) to Produce and Deliver Interleukin-10 in Bifidobacterium bifidum.

Not available

S-EPMC6308194 | biostudies-literature

Holo omic investigation of host and microbe in broiler chicken (HoloFood Trial 1/2/3)

Chicken farming is critical for future food security, yet there is still a need for improving animal welfare and optimised feeding strategies. HoloFood will explore the interaction and impact of the microbiome together with the host (animal) in response to different feeding strategies already imp...

2023-06-13 | MTBLS6988 | MetaboLights

Humoral Responses Elicited by Adenovirus Displaying Epitopes Are Induced Independently of the Infection Process and Shaped by the Toll-Like Receptor/MyD88 Pathway.

Not available

S-EPMC5807684 | biostudies-literature

The Chemokine System as a Key Regulator of Pulmonary Fibrosis: Converging Pathways in Human Idiopathic Pulmonary Fibrosis (IPF) and the Bleomycin-Induced Lung Fibrosis Model in Mice.

Not available

S-EPMC11674266 | biostudies-literature

Infection-Mediated Priming of Phagocytes Protects against Lethal Secondary Aspergillus fumigatus Challenge.

Not available

S-EPMC4831689 | biostudies-literature

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial B - blue mussel-dose response)

An experimental trial was conducted on juvenile farmed Atlantic salmon (Salmo salar) in the framework of the HoloFood project, which aims to test the effect of novel sustainable feed additives in the feed of farmed salmon. Trial B blue mussel was used as a novel sustainable protein feed source in...

2023-06-13 | MTBLS4382 | MetaboLights

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121 Results

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