S1 domain - OmicsDI

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Unknown (1241)
Transcriptomics (920)
Genomics (101)
Proteomics (72)
Metabolomics (40)
Models (15)
Other (2)

Organisms

Mus musculus (454)
Homo sapiens (250)
Arabidopsis thaliana (50)
Saccharomyces cerevisiae (27)
Rattus norvegicus (18)
Danio rerio (16)
Taeniopygia guttata (10)
Vibrio harveyi (9)
Gallus gallus (8)
Oryza sativa (7)
Ovis aries (6)
Caenorhabditis elegans (6)
cellular organisms (5)
Zea mays (5)
Bos taurus (5)
synthetic construct (5)
Escherichia coli (4)
Schizosaccharomyces pombe (4)
Vitis vinifera (4)
Streptococcus pneumoniae (4)
Sus scrofa (4)
Drosophila melanogaster (4)
Lepidium sativum (3)
Saccharomyces cerevisiae S288C (3)
Oncorhynchus mykiss (3)
Candida albicans (3)
Embryophyta (2)
Sturnus vulgaris (2)
Mycobacterium avium subsp. paratuberculosis (2)
Podospora anserina (2)

Organisms

Homo sapiens (8)
Mus musculus (5)
Streptococcus pneumoniae D39 (2)
Saccharomyces cerevisiae (2)
Mesocricetus auratus (1)
synthetic construct (1)
Macaca mulatta (1)
Staphylococcus aureus (1)

Repository

biostudies-arrayexpress (995)
MetaboLights (40)
pride (34)
ENA (32)
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geo (11)
jPOST (6)
iProX (3)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (5)
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Disease

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Reference (1)
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Psoroptes ovis infestation (1)
Breast carcinoma (1)

Technology Type

Mass Spectrometry (34)
Mass spectrometry (30)
Shotgun proteomics (14)
Affinity purification coupled with mass spectrometry proteomics (10)
NMR spectroscopy (7)
Bottom-up proteomics (7)
Gel-based experiment (5)
Mass spectrometry assay (3)
Data-dependent acquisition (3)
Data-independent acquisition (2)
NMR spectroscopy assay (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (53)
NextSeq 500 (29)
Illumina HiSeq 4000 (25)
Illumina HiSeq 2500 (15)
Illumina HiSeq 2000 (9)
NextSeq 550 (6)
ScanArray 5000 [PerkinElmer] (5)
NextSeq 2000 (5)
GenePix Professional 4200A [Axon Instruments] (3)
Scanning hardware (3)
Illumina NovaSeq X (3)
DNBSEQ-G400 (3)
Illumina MiSeq (3)
X (2)
None (2)
GenePix 4000A [Axon Instruments] (2)
Axon- GenePix4000B (2)
10x Genomics Chromium Controller (2)
DNBSEQ-T7 (2)
Illumina HiSeq 1500 (2)
NanoString nCounter (1)
NEBNext rRNA Depletion Kit v2 and NEBNext Ultra II Directional RNA Library Prep Kit Illumina kits (1)
BD Rhapsody Express Instrument (1)
Chromium Next GEM Chip G (1)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (1)
Linux Bash Scripting (1)
NEBNext Ultra II Directional RNA Library Prep (1)
Qiagen RNeasy Mini Kit (1)
With L-glutamine supplemented with 10% fetal bovine serum (FBS) (Gibco) and 1% penicillin-streptomycin (10,000 units/mL penicillin and 10 mg/mL streptomycin) (Gibco). (1)
Nikon Eclipse Ti2 with brightfield and fluorescence capacity (TRITC) (1)

Publication Date

2010 (118)
2014 (117)
2012 (105)
2013 (104)
2015 (99)
2011 (77)
2008 (51)
2023 (47)
2009 (39)
2024 (37)
2025 (36)
2021 (34)
2016 (34)
2020 (32)
2005 (28)
2007 (28)
2022 (27)
2018 (25)
2026 (23)
2017 (22)
2019 (20)
2006 (16)
2004 (3)
2003 (1)

UNIPROT ID/AC

P28482 (6)
Q02750 (6)
P04049 (6)
P51452 (5)
P32485 (1)
P08018 (1)
P23561 (1)
P06784 (1)
P16892 (1)
Q5T1C6 (1)
P56279 (1)
P20936 (1)
Q13905 (1)
P10301 (1)
P15056 (1)
P47736 (1)
P67775 (1)
Q15118 (1)
Q07889 (1)
P37840 (1)
P62834 (1)
P23443 (1)
P35568 (1)
P42345 (1)
P60484 (1)

ENSEMBL ID

ENSG00000151468 (1)

CHEBI ID

CHEBI:15354 (15)
CHEBI:18186 (12)
CHEBI:28044 (12)
CHEBI:16737 (12)
CHEBI:28300 (11)
CHEBI:24898 (11)
CHEBI:25017 (11)
CHEBI:17754 (11)
CHEBI:15891 (11)
CHEBI:15428 (11)
CHEBI:16449 (11)
CHEBI:27897 (11)
CHEBI:26271 (10)
CHEBI:25094 (10)
CHEBI:18237 (10)
CHEBI:32816 (10)
CHEBI:17368 (10)
CHEBI:16811 (9)
CHEBI:27266 (9)
CHEBI:17268 (9)
CHEBI:18089 (9)
CHEBI:30769 (9)
CHEBI:17822 (8)
CHEBI:27570 (8)
CHEBI:26986 (8)
CHEBI:16708 (8)
CHEBI:29016 (8)
CHEBI:75045 (1)
CHEBI:33699 (1)
CHEBI:26523 (1)

Metabolite Name

Alanine (9)
Choline (8)
Glutamine (8)
Creatine (8)
Leucine (7)
Glycerol (7)
Creatinine (7)
Histidine (6)
Ethanol (6)
Acetaminophen (6)
Betaine (6)
Lysine (6)
Threonine (6)
Sarcosine (6)
Phenylalanine (6)
Glucose (6)
3-Hydroxybutyrate (5)
2-oxindole-3-acetic acid|5-methoxyindole-2-carboxylic acid|5-hydroxyindole-3-acetic acid (5)
Tuberonic acid (5)
Tuberonic acid methyl ester (5)
Jasmonic acid methyl ester (5)
3-oxo-2-(2-(Z)-pentenyl)-cyclopentane-1-octanoic acid (5)
Cucurbic acid|9,10-dihydrojasmonic acid (5)
Cis/trans-12-oxo-phytodienoic acid (5)
Cis-zeatin-O-glucoside|trans-zeatin-O-glucoside|cis-zeatin-9-glucoside|trans-zeatin-9-glucoside|cis-zeatin-7-glucoside|trans-zeatin-7-glucoside (5)
1-acetylindole-3-carboxaldehyde (5)
Acetoacetate (5)
Uracil (5)
Valine (5)
Ornithine (5)

First Public Date

2025 (6)
2024 (6)
2015 (4)
2022 (3)
2020 (3)
2014 (3)
2021 (2)
2017 (2)
2016 (2)
2023 (1)

Modelling Approach

Ordinary differential equation model (14)

Lab affiliation

1 Division of Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-17 177 Stockholm, Sweden 2 Chemical Proteomics Unit, Science for Life Laboratory (SciLifeLab), SE-17 177 Stockholm, Sweden 3 Chemical Proteomics, Swedish National Infrastructure for Biological Mass Spectrometry (BioMS), SE-17 177 Stockholm, Sweden (1)
1.Department of Colorectal Surgery, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. 2.Guangdong Provincial Key Laboratory of Colorectal and Pelvic Floor Diseases, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. (1)
Assistant professor Division of Biology and Medicine, Brown University, Providence, RI 02903, USA Center for Cancer Research Development, Proteomics Core Facility, Rhode Island Hospital, Providence, RI 02903, USA (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Germany Bioanalytics, Institute for Clinical Chemistry, University Medical Center Goettingen, Germany (1)
Biochemistry Center Heidelberg (BZH) INF 328 69120 Heidelberg (1)
Biochemistry Center Heidelberg University of Heidelberg Germany (1)
Biomolecular Mass Spectrometry & Proteomics, Bijvoet Center for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, the Netherlands. (1)
Brown University MCB Department (1)
College of Forestry and Horticulture, Xinjiang Agricultural University；Institute of Horticulture Crops, Ningxia Academy of Agriculture and Forestry Sciences； (1)
Complex Carbohydrate Research Center (1)
Complex Carbohydrate Research Center, Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA. (1)
Current affiliation: Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, PA (1)
Department of Biochemistry Center for Biomedical Mass Spectrometry Boston University School of Medicine (1)
Department of Biochemistry and Molecular Biology; and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, VIC 3010. Australia (1)
Department of Chemical Sciences, University of Naples “Federico II”, Naples, Italy CEINGE Advanced Biotechnologies, Naples, Italy (1)
Department of Immunology, Microbiology and Parsitology Faculty of Science and Technology University of the Basque Country (UPV/EHU) (1)
Department of Urology, Department of Biochemistry and Molecular Biology, Cancer Research Institute, SUNY Upstate Medical University, 750 E. Adams St., Syracuse, NY 13210, USA (1)
Group Leader, Primate Biology, National Institute for Research in Reproductive Health, India (1)
Institute of Parasitology Biology Center, Czech Academy of Sciences Branišovská 31 370 05 České Budějovice CZECH REPUBLIC (1)
Leibniz Institute of Plant Biochemistry, Department Biochemistry of Plant Interactions, Weinberg 3, 06120 Halle (Saale), Germany (1)
Lysine Methylation Promotes VEGFR-2 Activation and Angiogenesis (1)
Mass Spectrometry and Proteomics Facility, The Netherlands Cancer Institute, Amsterdam, The Netherlands (1)
Max Planck Insitute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (1)
Oregon Hearing Research Center Oregon Health & Science University Portland, OR 97239 (1)
Research Center for Parasites & Vectors, College of Veterinary Medicine, Hunan Agricultural University, Changsha 410128, PR China (1)
School of Life Sciences, University of Technology Sydney, Faculty of Science, Sydney, New South Wales, Australia Centenary Institute, University of Sydney, Sydney, New South Wales, Australia (1)
State Key Laboratory of Microbial Technology, Microbiology and Biotechnology Institute, Shandong University (1)
The Chinese University of Hong Kong (1)
The Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Blegdamsvej 3, DK-2200 Copenhagen, Denmark. (1)
Translational and Experimental Ophthalmology, University Medical Center in Mainz (1)

IsPrivate

False (15)

Model Flag

Non Kinetic (1)

Classification

bacteria (3)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (624)
RNA-seq of coding RNA (137)
ChIP-seq (50)
RNA-seq of coding RNA from single cells (24)
Other (16)
Methylation profiling by array (14)
Comparative genomic hybridization by array (13)
Methylation profiling by high throughput sequencing (12)
Unknown experiment type (10)
Proteomic profiling by array (9)
RNA-seq of non coding RNA (8)
ChIP-chip by tiling array (7)
MicroRNA profiling by array (7)
ChIP-chip by array (6)
DNA-seq (6)
RNA-seq of total RNA (5)
Animal - High-throughput sequencing (4)
Spatial transcriptomics by high-throughput sequencing (4)
Differential (3)
Cell line - High-throughput sequencing (3)
Transcription profiling by tiling array (3)
Cell line - Single-cell sequencing (2)
Baseline (2)
High-throughput sequencing (2)
Genotyping by array (2)
RIP-seq (2)
RNA-seq of non coding RNA from single cells (1)
Cell line - Two-color microarray (1)
Plant - Two-color microarray (1)
Human - Methylation microarray (1)

Release Date

2021 (246)
2022 (242)
2023 (177)
2010 (147)
2012 (140)
2014 (138)
2015 (131)
2013 (131)
2020 (119)
2011 (104)
2024 (87)
2025 (86)
2008 (75)
2009 (68)
2016 (57)
2017 (51)
2018 (47)
2019 (46)
2007 (41)
2005 (28)
2006 (25)
2026 (24)
2004 (12)
2003 (5)
2002 (3)
2000 (3)
2001 (2)
1998 (1)

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Spike S1 domain interactome in non-pulmonary systems: a role beyond the receptor recognition

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) causes Coronavirus Disease 2019 (COVID-19), which, since 2019 in China, has rapidly become a worldwide pandemic. The aggressiveness and global spread were enhanced by the many SARS-CoV-2 variants that have been isolated up to now. These mu...

ORGANISM(S): Homo sapiens (Human)

2023-03-11 | PXD035709 | Pride

SARS-CoV-2 gained a novel spike protein S1-N-Terminal Domain (S1-NTD).

Not available

S-EPMC8917877 | biostudies-literature

Evidence that the TRPV1 S1-S4 membrane domain contributes to thermosensing.

Not available

S-EPMC7441067 | biostudies-literature

The role of the S1 domain in exoribonucleolytic activity: substrate specificity and multimerization.

Not available

S-EPMC1800512 | biostudies-literature

RNA-Binding S1 Domain in Bacterial, Archaeal and Eukaryotic Proteins as One of the Evolutionary Markers of Symbiogenesis.

Not available

S-EPMC11641769 | biostudies-literature

Deletion of KDM2B DNA-binding domain affects RING1B and SUZ12 occupancy

The histone lysine demethylase protein, KDM2B, associates with the PCGF1/PRC1 complex and binds to non-methylated DNA through its ZF-CxxC domain, providing a possible molecular link between CpG island elements and polycomb nucleation (Farcas et al., 2012, Wu et al., 2013). Here, a novel genetic syst...

ORGANISM(S): Mus musculus

2014-05-27 | E-GEOD-52619 | biostudies-arrayexpress

S1-Domain RNA Binding Protein (CvfD) Is a New Post-Transcriptional Regulator That Mediates Cold Shock, Phosphate Transport, and Virulence in Streptococcus pneumoniae D39

PRJNA625989 | ENA

S1-Domain RNA Binding Protein (CvfD) Is a New Post-Transcriptional Regulator That Mediates Cold Shock, Phosphate Transport, and Virulence in Streptococcus pneumoniae D39

PRJNA629043 | ENA

Direct interaction of the N-terminal domain of ribosomal protein S1 with protein S2 in Escherichia coli.

Not available

S-EPMC3296737 | biostudies-literature

Spike S1 domain interactome in non-pulmonary systems: A role beyond the receptor recognition.

Not available

S-EPMC9550266 | biostudies-literature

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