Salazar A A - OmicsDI

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Unknown (4111)
Proteomics (63)
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Homo sapiens (36)
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cellular organisms (1)
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Organisms

Girardinichthys multiradiatus (2)
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pride (49)
biostudies-arrayexpress (43)
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Technology Type

Mass Spectrometry (49)
Shotgun proteomics (28)
Bottom-up proteomics (8)
Data-independent acquisition (8)
Mass spectrometry (3)
Data-dependent acquisition (3)
Gel-based experiment (3)
Affinity purification coupled with mass spectrometry proteomics (2)
All-ion fragmentation (2)
Top-down proteomics (2)
NMR spectroscopy (1)
DiaPASEF (1)
MSE (1)

Instrument Platform

Q Exactive (5)
Agilent 7890A GC with 5975C inert XL MSD (2)
LTQ Orbitrap Velos (2)
Q Exactive Plus (2)
Liquid Chromatography MS - positive - reverse phase (2)
MinION (1)
Illumina HiSeq 4000 (1)
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Xevo G2S QTOF mass spectrometer (Waters Corp.) (1)
Xevo G2S QTOF mass spectrometer (Waters) (1)
HCTultra (1)

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2020 (13)
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2013 (9)
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2011 (7)
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2008 (5)
2026 (5)
2016 (4)
2015 (3)
2012 (3)
2010 (3)
2009 (3)
2019 (3)
2018 (3)
2017 (2)
2005 (2)
2006 (1)
2004 (1)

CHEBI ID

CHEBI:10319 (1)
CHEBI:10432 (1)
CHEBI:10723 (1)
CHEBI:10983 (1)
CHEBI:109895 (1)
CHEBI:1156 (1)
CHEBI:11805 (1)
CHEBI:11851 (1)
CHEBI:1189 (1)
CHEBI:12194 (1)
CHEBI:1294 (1)
CHEBI:12947 (1)
CHEBI:1301 (1)
CHEBI:13115 (1)
CHEBI:1359 (1)
CHEBI:13705 (1)
CHEBI:14086 (1)
CHEBI:1438 (1)
CHEBI:1463 (1)
CHEBI:15343 (1)
CHEBI:15345 (1)
CHEBI:15346 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)
CHEBI:15366 (1)
CHEBI:15367 (1)
CHEBI:15371 (1)
CHEBI:15372 (1)
CHEBI:15374 (1)
CHEBI:15377 (1)

Metabolite Name

5-oxo-proline (1)
Acetylcarnitine (1)
Butyrylcarnitine (1)
CE 18:0 (1)
Cer 34:0;2O (1)
Cer 34:1;2O|Cer 18:1;2O/16:0 (1)
Cer 36:1;2O (1)
Cer 38:0;3O (1)
Cer 40:0;2O|Cer 18:0;2O/22:0 (1)
Cer 40:1;2O|Cer 18:1;2O/22:0 (1)
Cer 40:2;2O|Cer 18:1;2O/22:1 (1)
Cer 42:0;2O|Cer 18:0;2O/24:0 (1)
Cer 42:0;3O|Cer 18:0;2O/24:0;O (1)
Cer 42:1;2O|Cer 18:1;2O/24:0 (1)
Cer 43:1;2O|Cer 18:1;2O/25:0 (1)
Cysteineglutathione-disulfide (1)
DG 32:0|DG 16:0_16:0 (1)
DG 34:0|DG 16:0_18:0 (1)
DG 36:1|DG 18:0_18:1 (1)
Glutamic acid (1)
Glutathione (1)
Glycerophosphocholine (1)
Hydroxyprolyl-valine (1)
Hydroxyvitamin D3 (1)
Isoleucine (1)
L-Leucine (1)
LPE O-16:1 (1)
LPE O-18:1 (1)
Leucine (1)
N-Palmitoyl Lisine (1)

First Public Date

2022 (4)
2021 (2)
2026 (1)
2025 (1)
2024 (1)
2023 (1)
2020 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

University Medicine Greifswald (4)
Centre for Cancer Cell and Molecular Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse square, London EC1M 6BQ, The United Kingdom. (2)
Department of Functional Genomics, Interfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany (2)
1) Instituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Porto, Portugal 2) Instituto de Engenharia Biomédica (INEB), Universidade do Porto, Porto, Portugal 3) Instituto de Ciências Biomédicas Abel Salazar (ICBAS), Universidade do Porto, Porto, Portugal (1)
1- i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal 2- IBMC - Instituto de Biologia Celular e Molecular, Universidade do Porto, Portugal 3- ICBAS - Instituto de Ciências Biomédicas Abel Salazar, Universidade do Porto, Portugal (1)
1- i3S - Instituto de Investigação e Inovação em Saúde,Universidade do Porto, Portugal 2- IBMC - Instituto de Biologia Celular e Molecular, Universidade do Porto, Portugal 3- ICBAS - Instituto de Ciências Biomédicas Abel Salazar, Universidade do Porto, Portugal (1)
Aix-Marseille univ, CNRS, Inserm, Institut Paoli-Calmettes, CRCM, Marseille Protéomique (1)
Barts Cancer Institute, Queen Mary University of London, Charterhouse square, London EC1M 6BQ. (1)
Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Kingdom of Saudi Arabia (1)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ The United Kingdom. (1)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ The United Kingdom. (1)
Centre for Cancer Cell & Molecular Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, The United Kingdom. (1)
Centre for Cancer Cell and Molecular Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse square, London EC1M 6BQ, The United Kingdom. (1)
Centre for Cancer Cell and Molecular Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse square, London EC1M 6BQ, United Kingdom. (1)
Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico. (1)
Department of Anthropology, University of Oklahoma, USA (1)
Department of Functional Genomics, University Medicine Greifswald (1)
Director, Advanced Clinical Biosystems Research Institute, Cedars-Sinai Medical Center, Los Angeles, CA 90048 (1)
Division of Tropical Medicine and Infectious Diseases, Center of Internal Medicine II, Rostock University Medical Center, Rostock, Germany (1)
Dr. Elke Hammer Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald (1)
Dr. Elke Hammer Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald Germany (1)
Glial Cell Biology Lab, i3s - Instituto de Investigação e Inovação em Saúde, Porto, Portugal (1)
Institut Pasteur de Montevideo (1)
Institute for Research and Innovation in Health, University of Porto, Porto, Portugal; Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal; Institute for Biomedical Sciences Abel Salazar of the University of Porto, Porto, Portugal; Faculty of Medicine of the University of Porto, Porto, Portugal. (1)
Institute for Research and Innovation in Health, University of Porto, Porto, Portugal; Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal; Institute for Biomedical Sciences Abel Salazar of the University of Porto, Porto, Portugal; Faculty of Medicine of the University of Porto, Porto, Portugal. (lab head) (1)
Instituto de Biomedicina - iBiMED Universidade de Aveiro 3810-193 Aveiro Portugal (1)
Interfaculty Institute of Genetics and Functional Genomics, Department of Functional Genomics, University Medicine Greifswald, Germany (1)
Interfaculty Institute of Genetics and Functional Genomics, Department of Functional Genomics, University Medicine Greifswald, Greifswald, Germany (1)
Laboratorio de amibas anfizoicas, Facultad de Estudios Superiores Iztacala, Universidad Nacional Autónoma de México (UNAM) (1)
Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee; Dow Street, Dundee DD1 5EH, U.K. (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Classification

bacteria (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (33)
RNA-seq of coding RNA (4)
Unknown experiment type (2)
High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
ChIP-seq (1)
Methylation profiling by array (1)

Release Date

2023 (495)
2022 (493)
2021 (482)
2025 (474)
2024 (434)
2020 (335)
2019 (260)
2018 (193)
2016 (153)
2017 (145)
2015 (137)
2014 (136)
2013 (96)
2026 (76)
2011 (57)
2012 (56)
2009 (31)
2008 (29)
2010 (28)
2006 (13)
2005 (9)
2007 (8)
2004 (6)
2003 (3)
1999 (2)
1998 (2)
2000 (1)

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Metabolic Footprinting of a Clear Cell Renal Cell Carcinoma in vitro Model for Human Kidney Cancer Detection

A protocol for harvesting and extracting extracellular metabolites from an in vitro model of human renal cell lines was developed to profile the exometabolome by means of a discovery-based metabolomics approach using ultraperformance liquid chromatography coupled to quadrupole-time-of-flight mass sp...

2018-11-14 | MTBLS737 | MetaboLights

Expression data from batch cultivations with A. niger, A. oryzae and A. nidulans grown on glucose and glycerol

Conserved transcriptional regulation of glycerol metabolism was investigated in three Aspergillus species, A. nidulans, A. oryzae and A. niger. For this purpose, batch cultivations under well controlled conditions were performed with the three Aspergilli. Samples for RNA extraction were collected an...

ORGANISM(S): Aspergillus oryzae

2010-06-21 | E-GEOD-15702 | biostudies-arrayexpress

Redescriptions of Nereis oligohalina (Rioja, 1946) and N. garwoodi Gonzalez-Escalante & Salazar-Vallejo, 2003 and description of N. confusa sp. n. (Annelida, Nereididae).

Not available

S-EPMC4591595 | biostudies-literature

A 1000-year-old mystery solved: Unlocking the molecular structure for the medieval blue from Chrozophora tinctoria, also known as folium.

Not available

S-EPMC7164948 | biostudies-literature

Network-based analysis of carbohydrate-active gene transcription in Aspergillus niger

Transcriptomics was performed on batch cultivations of A. niger grown on three monosaccharides and three complex carbohydrates with defined compositions as to allow the detection of cross-induction if present, and for demonstration of how enzyme interaction graphics can be used to visualize the glob...

ORGANISM(S): Aspergillus niger

2012-03-28 | E-GEOD-11930 | biostudies-arrayexpress

A tri-species Aspergillus array (nidulans arrays)

The full genome sequencing of the ?lamentous fungi Aspergillus nidulans, Aspergillus niger and Aspergillus oryzae has opened the possibilities for studying the cellular physiology of these fungi on a systemic level. As a tool to explore this, we are presenting an A?ymetrix GeneChip developed for tra...

ORGANISM(S): Emericella nidulans

2008-02-15 | E-GEOD-9275 | biostudies-arrayexpress

A tri-species Aspergillus array (oryzae arrays)

The full genome sequencing of the ﬁlamentous fungi Aspergillus nidulans, Aspergillus niger and Aspergillus oryzae has opened the possibilities for studying the cellular physiology of these fungi on a systemic level. As a tool to explore this, we are presenting an Aﬀymetrix GeneChip developed for tra...

ORGANISM(S): Aspergillus oryzae

2008-02-15 | E-GEOD-9277 | biostudies-arrayexpress

A tri-species Aspergillus array (niger arrays)

ORGANISM(S): Aspergillus niger

2008-02-15 | E-GEOD-9276 | biostudies-arrayexpress

A tri-species Aspergillus array

This SuperSeries is composed of the following subset Series: GSE9275: A tri-species Aspergillus array (nidulans arrays) GSE9276: A tri-species Aspergillus array (niger arrays) GSE9277: A tri-species Aspergillus array (oryzae arrays) Keywords: SuperSeries Refer to individual Series

ORGANISM(S): Aspergillus oryzae

2008-02-10 | E-GEOD-9298 | biostudies-arrayexpress

A new species and a new record of Liparis sect. Decumbentes (Malaxidinae, Orchidaceae) from Peru.

Not available

S-EPMC7228942 | biostudies-literature

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