Salmon J E JE - OmicsDI

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Unknown (73)
Transcriptomics (6)
Metabolomics (5)
Proteomics (2)

Organisms

Mus musculus (6)
Homo sapiens (2)

Repository

biostudies-arrayexpress (6)
MetaboLights (5)
pride (2)

Tissue

Retina (2)
Epithelial cell (1)

Disease

Leber congenital amaurosis (2)
Hepatomegaly (1)
Normal (1)

Technology Type

Mass spectrometry (4)
Mass Spectrometry (2)
Mass spectrometry assay (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiSeq 2500 (3)
Illumina HiSeq 4000 (1)
Liquid Chromatography MS - positive (1)

Publication Date

2023 (4)
2024 (3)
2018 (2)
2022 (1)
2021 (1)
2009 (1)
2006 (1)

CHEBI ID

CHEBI:143745 (2)
CHEBI:16359 (2)
CHEBI:195271 (2)
CHEBI:27997 (2)
CHEBI:28865 (2)
CHEBI:34687 (2)
CHEBI:35038 (2)
CHEBI:64563 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:10136 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:139138 (1)
CHEBI:143757 (1)
CHEBI:145227 (1)
CHEBI:16113 (1)
CHEBI:16196 (1)
CHEBI:16235 (1)
CHEBI:165384 (1)
CHEBI:16551 (1)
CHEBI:166468 (1)
CHEBI:168067 (1)
CHEBI:16811 (1)
CHEBI:16870 (1)
CHEBI:173703 (1)
CHEBI:17687 (1)
CHEBI:181094 (1)
CHEBI:181126 (1)
CHEBI:182695 (1)

Metabolite Name

1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
Cholic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
Taurocholic acid (2)
Tris(2-butoxyethyl) phosphate (2)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)
13(S)-HODE methyl ester (1)
16-Hydroxyhexadecanoic acid (1)
17(18)-EpETE (1)
2,6-Di-tert-butyl-4-hydroxymethylphenol (1)
2-((4R)-4-((3R,5R,6S,9S,10R,13R,14S,17R)-3,6-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
2-((4R)-4-((3R,5S,7R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
2-((R)-4-((3R,5S,7S,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
2-((R)-4-((3R,5S,7S,8R,9S,10S,13R,14S,17R)-3,7-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
4-(4-Hydroxyphenyl)butan-2-one|4-(4-Hydroxyphenyl)-2-butanone (1)
5(Z),8(Z),11(Z)-Eicosatrienoic acid methyl ester (1)
9(10)-EpOME (1)

Study type

RNA-seq of coding RNA (4)
Transcription profiling by array (2)

Release Date

2021 (19)
2023 (11)
2022 (10)
2025 (6)
2018 (5)
2014 (5)
2024 (4)
2017 (4)
2011 (4)
2019 (3)
2015 (3)
2009 (1)
2006 (1)
2020 (1)
2016 (1)
2012 (1)

Lab affiliation

Proteomic Plateform Necker - SFR Necker - US24 (2)

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Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

Animals and their associated microbiota share long evolutionary histories. However, it is not always clear how host genotype and microbiota interact to affect phenotype. We applied a hologenomic approach to explore how host-microbiota interactions shape lifetime growth and parasite infection in f...

2024-01-24 | MTBLS8575 | MetaboLights

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial B - blue mussel-dose response)

An experimental trial was conducted on juvenile farmed Atlantic salmon (Salmo salar) in the framework of the HoloFood project, which aims to test the effect of novel sustainable feed additives in the feed of farmed salmon. Trial B blue mussel was used as a novel sustainable protein feed source in...

2023-06-13 | MTBLS4382 | MetaboLights

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial C - blue mussel ensilage-dose response)

Testing the effect of blue mussel ensilage as a novel cost-efficient protein feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial C, alternative processi...

2023-06-13 | MTBLS4384 | MetaboLights

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial A - seaweed-dose response)

2023-06-13 | MTBLS4381 | MetaboLights

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial D - fermented seaweed open water-dose response)

Testing the effect of seaweed as a novel cost-efficient feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial D, an alternative marine compound is include...

2023-06-13 | MTBLS6733 | MetaboLights

Mutations in RAS pathway induce synthetic lethality of MEK inhibition with mitochondrial oxidative metabolism in acute myeloid leukemia

Bulk RNAseq of primary AML samples at diagnosis

ORGANISM(S): Homo sapiens

2021-12-31 | E-MTAB-10048 | biostudies-arrayexpress

Genotype-specific responses in Atlantic salmon (Salmo salar) subject to dietary fish oil replacement by vegetable oil: a liver transcriptomic analysis.

Not available

S-EPMC3113789 | biostudies-literature

A salmon protein hydrolysate exerts lipid-independent anti-atherosclerotic activity in ApoE-deficient mice.

Not available

S-EPMC4026378 | biostudies-literature

Transcription profiling of mouse intestinal polyps from Apc Delta14 strain treated with parecoxib

A "Cartes d'Identite des Tumeurs" (CIT) project from the french Ligue Nationale Contre le Cancer (http://cit.ligue-cancer.net). Comparison of mouse intestinal polyps response to parecoxib with controls.

ORGANISM(S): Mus musculus

2009-05-31 | E-MEXP-2156 | biostudies-arrayexpress

Transcription profiling of mouse liver in conditional knockouts of the tumor suppressor gene Apc identifies Wnt/bet-catenin signaling activation in hepatocytes

A "Cartes d'Identite des Tumeurs" (CIT) project from the french Ligue Nationale Contre le Cancer (http://cit.ligue-cancer.net). Conditional Knockout mouse model for the tumor suppressor gene Ap, Apc 2lox. The disruption of the Apc gene is realized by injection of an adenovirus encoding the Cre recom...