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TranscriptomicsTranscription profiling of Atlantic salmon cell line SHK-1 exposed to interferon type 1 and interferon gamma for 6 or 24 hours
We have stimulated an Atlantic salmon cell line, SHK-1, with both type I and type II recombinant salmonid IFNs and analysed the transcriptional response by microarray analysis. Cells were exposed to recombinant IFNs for 6 or 24 h or were left unexposed as controls. RNA was hybridised to a 17k feat...
ORGANISM(S): Salmo salar 
2007-10-08 | E-MEXP-1023 | biostudies-arrayexpress
ProteomicsMolecular characterisation of the Atlantic salmon gill epithelial cell line ASG-10
Fish gills are not only the respiratory organ, but also essential for ion-regulation, acid-base control, detoxification, waste excretion and host defense. Multifactorial gill diseases are common in farmed Atlantic salmon, and still poorly understood. Understanding gill pathophysiology is of paramoun...
ORGANISM(S): Salmo salar (Atlantic salmon) 
2024-01-26 | PXD044533 | Pride
Transcriptome Gill cell line Salmon cell line Proteome 
TranscriptomicsTranscriptomic analysis of responses to infectious salmon anemia virus infection in macrophage-like cells
The aquatic orthomyxovirus infectious salmon anemia virus (ISAV) is an important pathogen for salmonid aquaculture, however little is known about protective and pathological host responses to infection. We have investigated intracellular responses during cytopathic ISAV infection in the macrophage-l...
ORGANISM(S): Salmo salar 
2008-04-16 | E-GEOD-11160 | biostudies-arrayexpress
TranscriptomicsGene expression in liver, gill, hypothalamus, pituitary, and olfactory rosettes from Atlantic salmon parr and smolt
To identify genes involved in the developmental process of Atlantic salmon smoltification, gene expression was compared between smolt and parr in tissues involved in osmoregulation (gill), metabolism (liver), imprinting (olfactory rosettes) and neuroendocrine control (hypothalamus and pituitary). ...
ORGANISM(S): Salmo salar 
2012-08-20 | E-GEOD-33711 | biostudies-arrayexpress
ProteomicsBlack soldier fly as protein source for salmon
The present study was conducted to investigate the effect of graded levels of black soldier fly larvae (BSFL) (Hermetia illucens) meal and BSFL paste in extruded diets for Atlantic salmon (Salmo salar). A total of 1260 Atlantic salmon with 34 g of mean initial weight were randomly distributed into 2...
ORGANISM(S): Salmo salar (Atlantic salmon) 
2021-02-10 | PXD019125 | Pride
Skin mucus Salmon Immune response 
TranscriptomicsTranscription profiling by array of Atlantic salmon head kidney cells infected with infectious pancreatic necrosis virus
Infectious pancreatic necrosis (IPN) is a serious viral disease that causes significant economic losses in salmon aquaculture. To characterize the host-pathogen relationship in IPN, we analysed transcriptional profiles of salmon head kidney (SHK-1) cells infected with infectious pancreatic necrosi...
ORGANISM(S): Salmo salar 
2011-01-01 | E-TABM-1000 | biostudies-arrayexpress
GenomicsDevelopment and Characterisation of a Novel Cell Line Derived from Coho Salmon (Oncorhynchus kisutch)
CSFL-1NC Cell Line
PRJEB90578 | ENA
TranscriptomicsRNA-seq of human breast cancer cell lines with METTL3 knockdown
We assess the effect of METTL3 on gene expression and transcriptional splicing in three different human breast cancer cell lines
ORGANISM(S): Homo sapiens 
2022-07-01 | E-MTAB-11664 | biostudies-arrayexpress
TranscriptomicsFusion gene KMT2A::SEPTIN6 in AML cell line KOPM-88
KMT2A (alias MLL) is located at chromosomal position 11q23 and en-codes histone methyltransferase 2A which activates genes via methylation of histone H3 lysine K4 in their chromatin. Mutations of KMT2A, including partial tandem duplication (PTD) and fusion with partner genes are present in both lymp...
ORGANISM(S): Homo sapiens 
2026-06-29 | E-MTAB-17091 | biostudies-arrayexpress
UnknownUnderstanding host response to infectious salmon anaemia virus in an Atlantic salmon cell line using single-cell RNA sequencing.
Not available
S-EPMC10061729 | biostudies-literature
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