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TranscriptomicsSingle-cell RNA sequencing data of zebrafish lymphatic and venous endothelial cells at different developmental stages (36 hpf, 48 hpf, 120 hpf (5 dpf) and 168 hpf (7 dpf))
This dataset contains single-cell RNA sequencing (scRNA-seq) profiles of zebrafish venous and lymphatic endothelial cells across development. Endothelial cells were isolated by FACS from transgenic zebrafish embryos and larvae at 36 hpf, 48 hpf, 5 dpf (120 hpf), and 7 dpf (168 hpf) using endothelial...
ORGANISM(S): Danio rerio 
2026-09-28 | E-MTAB-16797 | biostudies-arrayexpress
TranscriptomicsSequentially acting Sox transcription factors in neural lineage development [RNA-seq]
We report sequential binding but unique functions of different Sox transcription factors during distinct stages of neural differentiation Loss of function experiment for Sox2/Sox3 in neural progenitor cells and gene expression profile for Sox11 expressing (PSA NCAM sorted) early formed neurons.
ORGANISM(S): Mus musculus 
2011-11-01 | E-GEOD-33060 | biostudies-arrayexpress
GenomicsSequentially acting Sox transcription factors in neural lineage development [ChIP-seq]
We report sequential binding but unique functions of different Sox transcription factors during distinct stages of neural differentiation Examination of genome-wide Sox2, Sox3 and Sox11 transcription factor binding during different stages of neurogenesis.
ORGANISM(S): Mus musculus 
2011-11-01 | E-GEOD-33059 | biostudies-arrayexpress
UnknownPhase I study of intraventricular infusions of autologous ex vivo expanded NK cells in children with recurrent medulloblastoma and ependymoma.
Not available
S-EPMC7594549 | biostudies-literature
TranscriptomicsSingle-cell sequencing of HEK293FT cells with molecular spikes and recorded cell size
Individual HEK cells were dispensed using an F.SIGHT into individual wells while recording cell diameters. Each well contained 0.0321 pg of molecular spike-ins, a highly complex set of 264 molecular spikes, based on 11 unique spike sequences spanning different lengths (570 to 3070 nts) and GC conten...
ORGANISM(S): Homo sapiens 
2022-02-16 | E-MTAB-11433 | biostudies-arrayexpress
TranscriptomicsMulti-layer dosage compensation of the avian Z chromosome (single-cell RNA-seq)
Sex-chromosome dosage represents a challenge for heterogametic species to maintain correct proportion of gene products across chromosomes in each sex. While therian mammals (XX/XY system) achieve near-perfect balance of X-chromosome mRNAs through X-upregulation and X-inactivation, birds (ZW/ZZ syste...
ORGANISM(S): Gallus gallus 
2025-06-30 | E-MTAB-14470 | biostudies-arrayexpress
TranscriptomicsCharacterization of the starvation response in the Arabidopsis dcl1-9 mutant
The SnRK1 protein kinase, the plant ortholog of mammalian AMPK and yeast Snf1, is activated by the energy depletion caused by adverse environmental conditions. Upon activation, SnRK1 triggers extensive transcriptional changes to restore homeostasis and promote stress tolerance and survival partly th...
ORGANISM(S): Arabidopsis thaliana 
2013-07-15 | E-GEOD-46713 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Brassica oleracea seedlings subjected to phototropic or gravitropic stimuli
Plants, although sessile, can reorient growth axes in response to changing environmental conditions. Phototropism and gravitropism represent adaptive growth responses induced by changes in light direction and growth axis orientation relative to gravitational direction, respectively. The nearly 80-...
ORGANISM(S): Brassica oleracea 
2007-07-10 | E-GEOD-3847 | biostudies-arrayexpress
TranscriptomicsDecoding breast cancer tissue-stroma interactions using species-specific sequencing
Decoding genome-wide effects of experimental tissue-tissue or cell-cell interactions is important, for example, to better understand tumor-stroma interactions after transplantation (xenografting). Transcriptome analysis of intermixed human and mouse cells has frequently relied on the need to separat...
ORGANISM(S): Homo sapiens 
2015-08-12 | E-GEOD-66744 | biostudies-arrayexpress
UnknownCross-sectional investigation of HEMS activities in Europe: a feasibility study.
Not available
S-EPMC4265707 | biostudies-literature
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