Sanford M M - OmicsDI

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Unknown (2110)
Proteomics (35)
Transcriptomics (12)
Metabolomics (8)
Genomics (4)
Other (2)

Organisms

Homo sapiens (18)
Mus musculus (7)
Saccharomyces cerevisiae (3)
Sulfurihydrogenibium (3)
Canis lupus familiaris (2)
Peromyscus leucopus (1)
Drosophila melanogaster (1)
Mycoplasma mycoides subsp. capri str. GM12 (1)
Mycoplasmoides genitalium G37 (1)
synthetic bacterium JCVI-Syn3A (1)

Organisms

subsurface metagenome (1)
Mus musculus (1)

Repository

pride (19)
biostudies-arrayexpress (16)
MetaboLights (8)
MassIVE (7)
PAXDB (4)
ENA (4)
GPMDB (2)
PeptideAtlas (1)

Tissue

Cell culture (5)
Brain (2)
Liver (2)
Blood plasma (1)
Epithelial cell (1)
Epithelial cell of prostate (1)
Heart (1)

Disease

Not Available (2)
Castration-resistant prostate carcinoma (1)
Fibrolamellar carcinoma (1)
Prostate adenocarcinoma (1)
Saul-Wilson syndrome (1)

Technology Type

Mass Spectrometry (19)
Mass spectrometry (7)
Bottom-up proteomics (7)
Shotgun proteomics (6)
Data-dependent acquisition (5)
Data-independent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (2)
NMR spectroscopy (1)
All-ion fragmentation (1)
Gel-based experiment (1)

Instrument Platform

Instrument (2)
Orbitrap Fusion Lumos (2)
Q Exactive (2)
Q Exactive Plus (2)
Liquid Chromatography MS - positive - reverse phase (2)
LTQ Orbitrap Velos (1)
Orbitrap Fusion ETD (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - - - Q Exactive (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Nuclear Magnetic Resonance (NMR) - (1)
LCQ Classic (1)

Publication Date

2025 (7)
2015 (6)
2020 (5)
2026 (5)
2018 (4)
2013 (4)
2019 (4)
2024 (4)
2016 (3)
2010 (3)
2014 (2)
2022 (2)
2023 (2)
2012 (1)
2008 (1)
2021 (1)
2004 (1)

UNIPROT ID/AC

10116.ENSRNOP00000002498 (2)
10116.ENSRNOP00000003224 (2)
10116.ENSRNOP00000013780 (2)
10116.ENSRNOP00000026719 (2)
10116.ENSRNOP00000034905 (2)
10116.ENSRNOP00000039971 (2)
10116.ENSRNOP00000049080 (2)
10116.ENSRNOP00000050143 (2)
10116.ENSRNOP00000052803 (2)
10116.ENSRNOP00000054637 (2)
10116.ENSRNOP00000061086 (2)
10116.ENSRNOP00000065048 (2)
10116.ENSRNOP00000065507 (2)
10116.ENSRNOP00000066654 (2)
10116.ENSRNOP00000066955 (2)
10116.ENSRNOP00000067711 (2)
1433E_RAT (2)
3HIDH_RAT (2)
6PGL_RAT (2)
9544.ENSMMUP00000000584 (2)
9544.ENSMMUP00000000801 (2)
9544.ENSMMUP00000001594 (2)
9544.ENSMMUP00000001794 (2)
9544.ENSMMUP00000001959 (2)
9544.ENSMMUP00000002322 (2)
9544.ENSMMUP00000002908 (2)
9544.ENSMMUP00000003176 (2)
9544.ENSMMUP00000003379 (2)
9544.ENSMMUP00000003922 (2)
9544.ENSMMUP00000004496 (2)

CHEBI ID

CHEBI:30915 (3)
CHEBI:15611 (2)
CHEBI:15676 (2)
CHEBI:15727 (2)
CHEBI:15741 (2)
CHEBI:15887 (2)
CHEBI:15891 (2)
CHEBI:16020 (2)
CHEBI:16113 (2)
CHEBI:16199 (2)
CHEBI:16344 (2)
CHEBI:16411 (2)
CHEBI:16450 (2)
CHEBI:16704 (2)
CHEBI:16811 (2)
CHEBI:17148 (2)
CHEBI:17368 (2)
CHEBI:17596 (2)
CHEBI:17650 (2)
CHEBI:17712 (2)
CHEBI:17750 (2)
CHEBI:17775 (2)
CHEBI:17964 (2)
CHEBI:18012 (2)
CHEBI:18089 (2)
CHEBI:18186 (2)
CHEBI:18211 (2)
CHEBI:18237 (2)
CHEBI:24898 (2)
CHEBI:25094 (2)

Metabolite Name

Fumarate (2)
Hypoxanthine (2)
Methionine sulfoxide (2)
N-acetylalanine (2)
N-acetylserine (2)
Oxoglutarate (2)
Pyruvate (2)
Succinate (2)
Urea (2)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1)* (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-arachidonoyl-GPA (20:4) (1)
1-arachidonoyl-GPI (20:4)* (1)
1-docosene (1)
1-lignoceroyl-GPC (24:0) (1)
1-linolenoyl-GPC (18:3)* (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6)* (1)
1-linoleoyl-GPA (18:2)* (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2)* (1)
1-linoleoyl-GPI (18:2)* (1)
1-methyl-4-imidazoleacetate (1)
1-methyladenine (1)

First Public Date

2025 (1)
2024 (1)
2020 (1)
2018 (1)

Study type

Transcription profiling by array (10)
Proteomic profiling by array (4)
One-color microarray (1)
RNA-seq of coding RNA (1)

Release Date

2022 (192)
2025 (187)
2021 (187)
2020 (161)
2023 (150)
2024 (144)
2019 (136)
2018 (134)
2015 (131)
2016 (130)
2014 (130)
2017 (128)
2013 (96)
2011 (64)
2012 (59)
2010 (46)
2026 (18)
2008 (12)
2006 (7)
2007 (5)
2003 (3)
2009 (2)
2005 (2)
2002 (1)
2000 (1)

Lab affiliation

Sanford Burnham Prebys Medical Discovery Institute (2)
University of Illinois Urbana-Champaign (2)
Albert Resnick, M.D. Associate Professor Head, Weslie R. and William H. Janeway Laboratory of Molecular Metabolism The Rockefeller University (1)
Cancer Metabolism and Microenvironment Program, NCI-Designated Cancer Center, Sanford Burnham Prebys Medical Discovery Institute (1)
Degenerative Diseases Program, Center for Genetic Disorders and Aging Research, Sanford Burnham Prebys Medical Discovery Institute (1)
Department of Biochemistry and Molecular Biology, University of Maryland, Baltimore, MD 21201. Marlene and Stewart Greenebaum Comprehensive Cancer Center, Baltimore, MD 21201. (1)
Department of Molecular Biology and Genetics, Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853 (1)
Department of Pediatrics, University of Alabama at Birmingham, United States of America. (1)
Director Sanford Children’s Health Research Center Sanford Burnham Prebys Medical Discovery Institute 10901 N Torrey Pines Rd, La Jolla, CA 92037 (1)
Director Sanford Stem Cell Education and Integrated Space Stem Cell Orbital Research (ISSCOR) Center Director Gene Therapy Initiative (1)
Director, NCI-Designated Cancer Center Professor, Cancer Metabolism and Microenvironment Program Sanford Burnham Prebys Medical Discovery Institute 10901 North Torrey Pines Road La Jolla, CA 92037 (1)
Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH),Stockholm, Sweden (1)
Kelly: Diabetes and Obesity Research Center, Sanford-Burnham Medical Research Institute, Orlando, Florida, USA. Coon: Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA Genome Center, University of Wisconsin-Madison, Madison, WI 53706, USA (1)
Laboratory of Cellular Biophysics, The Rockefeller University, 1230 York Avenue, New York, NY 10065 USA (1)
Laboratory of Cellular Biophysics, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA. (1)
MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK. (1)
Sanford Burnham Prebys (1)

Tags

xref:PubMed:40766702 (1)
xref:EuropePMC:PMC10771303 (1)
xref:EuropePMC:PMC12844516 (1)

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Precision Population Medicine in Primary Care: The Sanford Chip Experience.

Not available

S-EPMC7994529 | biostudies-literature

Untargeted metabolomics profiling reveals exercise intensity-dependent alterations in Thoroughbred racehorses’ plasma after routine conditioning sessions

Thoroughbred (TB) racehorses are subjected to rigorous conditioning programs involving exercise sessions of various types, distances and intensities. These programs aim to optimize both their physical and mental capabilities, which are essential to achieve maximal performance. Conventional invest...

2024-01-16 | MTBLS8285 | MetaboLights

Vaccination against the M protein of Streptococcus pyogenes prevents death after influenza virus: S. pyogenes super-infection.

Not available

S-EPMC4146501 | biostudies-literature

Broadening the heterologous cross-neutralizing antibody inducing ability of porcine reproductive and respiratory syndrome virus by breeding the GP4 or M genes.

Not available

S-EPMC3691207 | biostudies-literature

Asymmetric introgression between the M and S forms of the malaria vector, Anopheles gambiae, maintains divergence despite extensive hybridization.

Not available

S-EPMC3222736 | biostudies-literature

Binding host proteins to the M protein contributes to the mortality associated with influenza-Streptococcus pyogenes superinfections.

Not available

S-EPMC5845574 | biostudies-literature

JNK-mediated phosphorylation of Cdc25C regulates cell cycle entry and G(2)/M DNA damage checkpoint.

Not available

S-EPMC2863176 | biostudies-literature

Effect of p38 MAPK inhibitor SB203580 on gene expression in monocytic THP-1 cells stimulated with HIV gp120 or LPS.

Human monocytic THP-1 cells were exposed to HIV envelope protein gp120 or bacterial LPS in the presence and absence of a pharmacological inhibitor of the p38 mitogen-activated protein kinase (MAPK) for 4 and 24 hours. A microarray analysis was performed in order to assess differential gene expressio...

ORGANISM(S): Homo sapiens

2014-12-25 | E-GEOD-53712 | biostudies-arrayexpress

Workforce Considerations When Building a Precision Medicine Program.

Not available

S-EPMC9692406 | biostudies-literature

Molecular structure and peptidoglycan recognition of Mycobacterium tuberculosis ArfA (Rv0899).

Not available

S-EPMC3269530 | biostudies-literature

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2171 Results

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