Sara - OmicsDI

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Unknown (1075)
Transcriptomics (613)
Proteomics (330)
Genomics (272)
Metabolomics (49)
Models (16)
Multiomics (13)
Genomic (5)
Other (3)

Organisms

Homo sapiens (439)
Mus musculus (144)
Staphylococcus aureus (21)
Saccharomyces cerevisiae (16)
Drosophila melanogaster (16)
Arabidopsis thaliana (16)
Bos taurus (15)
Vitis vinifera (12)
Rattus norvegicus (12)
Enchytraeus albidus (8)
Danio rerio (8)
Populus trichocarpa (6)
Anopheles gambiae (6)
Solanum lycopersicum (5)
Pyrococcus furiosus (3)
Canis lupus familiaris (3)
Heliconius sara (3)
Petunia x hybrida (2)
Pinus pinaster (2)
Lachancea waltii (2)
Brugia pahangi (2)
Malus domestica (2)
Macaca fascicularis (2)
Bordetella bronchiseptica (2)
Caenorhabditis elegans (2)
cellular organisms (1)
Vibrio parahaemolyticus RIMD 2210633 (1)
Thermotoga maritima (1)
Arabis alpina (1)
Thalassiosira pseudonana CCMP1335 (1)

Organisms

Staphylococcus aureus (10)
Heliconius sara (9)
Mus musculus (8)
Homo sapiens (7)
Elephas maximus indicus (3)
Loxodonta africana (3)
bovine gut metagenome (3)
Capra hircus (3)
Elephas maximus (2)
sheep gut metagenome (2)
goat gut metagenome (2)
Bos taurus (2)
Salmonella enterica subsp. enterica serovar Heidelberg str. SARA 39 (1)
Acrochordus granulatus (1)
Trimeresurus albolabris (1)
Pseudoxyrhopus heterurus (1)
Psammodynastes pulverulentus (1)
Pseudoxenodon macrops (1)
Pareas carinatus (1)
Oxyrhabdium leporinum (1)
Mimophis mahfalensis (1)
Imantodes cenchoa (1)
Cerberus rynchops (1)
Calamaria suluensis (1)
Aparallactus werneri (1)
Sibynophis collaris (1)
Stegonotus admiraltiensis (1)
Grayia smithii (1)
Toxicocalamus goodenoughensis (1)
Aureobasidium mangrovei (1)

Repository

biostudies-arrayexpress (639)
pride (212)
ENA (144)
EGA (84)
MassIVE (75)
MetaboLights (33)
geo (20)
PanoramaPublic (17)
PeptideAtlas (16)
GNPS (15)
BioModels (8)
jPOST (7)
dbGaP (5)
Cell Collective (4)
FAIRDOMHub (3)
iProX (3)
GPMDB (2)
MetabolomicsWorkbench (1)
PMR (1)

Tissue

Cell culture (45)
Plant cell (34)
Fibroblast (14)
Epithelial cell (13)
Others (11)
Permanent cell line cell (11)
Blood plasma (9)
Breast (7)
Bone marrow (6)
Epithelial cell of prostate (6)
Kidney (6)
Liver (6)
Brain (5)
Lung (5)
Skin (5)
Plasma Non-glyco (4)
Blood (4)
Prostate adenocarcinoma cell line (4)
Colon (3)
Fibroblast of lung (3)
Leukemia cell (3)
Stem cell (3)
AsPC-1 cell (2)
Blood vessel endothelial cell (2)
Cell line cell (2)
Early embryonic cell (2)
Embryonic stem cell (2)
Endothelial cell of umbilical vein (2)
Liver (1)
Eye (1)

Disease

Breast cancer (17)
Disease free (10)
Prostate carcinoma (5)
Chronic kidney disease (4)
Malignant neoplasm of ovary (4)
Normal (3)
Chronic kidney disease (3)
Decreased fumarate hydratase activity (3)
Leukemia (3)
Melanoma (3)
Non-small cell lung carcinoma (3)
Obesity (3)
Prostate cancer (3)
Cancer (2)
Osteosarcoma (2)
Not Available (2)
Brain cancer (2)
Cervix carcinoma (2)
Pancreatic cancer (2)
Viral infectious disease (2)
Myelodysplasia (1)
Rheumatoid arthritis (1)
Metastatic hepatocellular carcinoma (1)
Papillary thyroid carcinoma (1)
Acute Myeloid Leukemia (1)
Plasmodium berghei CTRP knockout strain (Dessens et al., 1999) infection (1)
Adenocarcinoma (1)
Breast carcinoma (1)
Acute monocytic leukemia (1)
Acute myeloid leukemia (1)

Technology Type

Mass Spectrometry (213)
Shotgun proteomics (103)
Affinity purification coupled with mass spectrometry proteomics (49)
Bottom-up proteomics (46)
Data-dependent acquisition (36)
Mass spectrometry (24)
Data-independent acquisition (22)
Gel-based experiment (11)
Affinity proteomics (7)
Mass spectrometry assay (6)
Illumina HiSeq 2000 (4)
NMR spectroscopy (4)
SRM/MRM (4)
SWATH MS (3)
Olink affinity proteomics (2)
SomaScan affinity proteomics (2)
Illumina 450K array, ILLUMINA, Illumina HiSeq 2000, NextSeq 500 (1)
Illumina OncoArray (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Illumina Genome Analyzer II, Affymetrix snp 6.0, Illumina Genome Analyzer IIx, GPL570, Affymetrix GeneChip Human Genome U133 plus 2.0 (1)
Affymetrix 6.0 (1)
ESI (1)
DiaPASEF (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 500 (17)
Illumina NovaSeq 6000 (16)
Illumina HiSeq 4000 (14)
Illumina HiSeq 2000 (11)
Illumina HiSeq 2500 (7)
NextSeq 550 (3)
Sony SH800 (2)
IScan (2)
Spectronic Helios Alpha UV-Vis spectrophotometer (2)
Other (2)
GenePix 4000B [Axon Instruments] (2)
Illumina NovaSeq X (2)
Hamamatsu Nanozoomer S60 (1)
Illumina NOVAseq 6000 (1)
Deeptools, macs3 (1)
Illumina Hybridisation Oven (1)
3' v3.1 10X (1)
CytoFLEX SRT Benchtop Cell Sorter (1)
Sony SH800S Cell Sorter (1)
G2565BA Microarray Scanner (1)
Axon GenePix® 4000B laser scanner (Axon Instruments) (1)
Illumina iScan (1)
Affymetrix GeneChip Scanner 3000 7G (1)
Ultracentrifuge (1)
454 GS FLX+ (1)
ScanArray 5000 [PerkinElmer] (1)
GeneChip Scanner 3000 [Affymetrix] (1)
GenePix 4000A [Axon Instruments] (1)
G2565AA DNA microarray scanner [Agilent] (1)
Bioanalyser (1)

Publication Date

2012 (102)
2016 (83)
2015 (79)
2014 (74)
2013 (74)
2025 (66)
2010 (64)
2011 (62)
2021 (54)
2023 (49)
2024 (47)
2026 (47)
2022 (41)
2020 (37)
2008 (30)
2018 (28)
2009 (24)
2019 (23)
2017 (22)
2007 (19)
2006 (5)
2005 (2)
2004 (1)

UNIPROT ID/AC

P00533 (3)
P62993 (2)
P22681 (2)
P01133 (2)
O60716 (1)
P12830 (1)
O60315 (1)
P37275 (1)
O43623 (1)
O95863 (1)
Q9UJU2 (1)
P15884 (1)
Q06330 (1)
Q16665 (1)
P45984 (1)
P40763 (1)
Q13485 (1)
Q15796 (1)
Q04206 (1)
Q00653 (1)
P19838 (1)
P35222 (1)
O60674 (1)
P23458 (1)
P37173 (1)
P61224 (1)
P62834 (1)
Q9GZV5 (1)
P46937 (1)
P46531 (1)

ENSEMBL ID

ENSG00000170477 (9)
ENSG00000229353 (3)
ENSG00000147251 (1)
ENSG00000204131 (1)

CHEBI ID

CHEBI:30769 (13)
CHEBI:15428 (12)
CHEBI:28044 (10)
CHEBI:18012 (10)
CHEBI:15741 (9)
CHEBI:18186 (8)
CHEBI:18237 (8)
CHEBI:16199 (8)
CHEBI:16414 (8)
CHEBI:15891 (7)
CHEBI:18183 (7)
CHEBI:6650 (7)
CHEBI:28842 (7)
CHEBI:17203 (7)
CHEBI:16750 (7)
CHEBI:33508 (7)
CHEBI:16737 (7)
CHEBI:17368 (7)
CHEBI:17992 (6)
CHEBI:17822 (6)
CHEBI:26271 (6)
CHEBI:22660 (6)
CHEBI:26986 (6)
CHEBI:30751 (5)
CHEBI:28757 (4)
CHEBI:17234 (4)
CHEBI:15366 (4)
CHEBI:23008 (1)
CHEBI:14575 (1)
CHEBI:17158 (1)

Metabolite Name

Pyroglutamic acid (6)
Glycine (5)
Citric acid (5)
Phenylalanine (5)
L-Serine (5)
Taurine (4)
L-Alanine (4)
Glycine (4)
L-Histidine (4)
Stearic acid (4)
Pantothenic acid (4)
L-Proline (4)
Citric acid (4)
Tyrosine (4)
Adenosine (4)
Threonine (4)
Proline (4)
Glutamine (4)
Dodecanoic acid (4)
Urea (4)
L-Valine (4)
Hypoxanthine (4)
Caffeic acid (3)
Serine (3)
Proline (3)
Lysine (3)
Guanosine (3)
Betaine (3)
Asparagine (3)
Phenylalanine (3)

First Public Date

2021 (30)
2024 (22)
2025 (16)
2020 (14)
2026 (13)
2023 (10)
2022 (9)
2019 (8)
2014 (7)
2018 (6)
2016 (6)
2017 (3)

Modelling Approach

Ordinary differential equation model (5)
Constraint-based model (2)
Logical model (1)

Lab affiliation

Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (36)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (25)
CRUK Beatson Institute (13)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (9)
Alkahest Inc. (7)
CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (7)
CRUK - Scotland Institute - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (4)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (4)
CRUK -CRUK Scotland nstitute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (3)
Centre de recherche du Centre Hospitalier Universitaire (CHU) de Quebec-Université Laval, Québec, QC, Canada Centre de recherche sur le cancer de l’Université Laval, Québec, QC, Canada PROTEO-Quebec Network for Research on Protein Function, Engineering, and Applications, Québec, QC, Canada Department of Molecular Biology, Medical Biochemistry and Pathology, Université Laval, Québec, QC, Canada (3)
Research Center One Health Ruhr, University Alliance Ruhr & University Hospital Essen, Medical Faculty, University Duisburg-Essen (3)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (2)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK (2)
Cancer Research UK Beatson Institute (2)
Cancer Research UK Beatson Institute, Glasgow, UK (2)
Director of the Robert H. Lurie Comprehensive Cancer Center of Northwestern University and the Jesse, Sara, Andrew, Abigail, Benjamin and Elizabeth Lurie Professor of Oncology in the Departments of Medicine and Biochemistry and Molecular Genetics. (2)
Head of Proteomics, Beatson Institute for Cancer Research (2)
Head of Proteomics, CRUK Beatson Institute, UK (2)
Institute of Dendrology Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland (2)
Uppsala University, Department of Chemistry-BMC, Analytical Chemistry (2)
1) Vascular Biology Program, Boston Children's Hospital, Boston, MA, United States 2) Department of Surgery, Boston Children's Hospital and Harvard Medical School, Boston, MA, United States (1)
1. Peripheral Neuropathy Research Group, Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium 2. Laboratory of Neuromuscular Pathology, Institute Born Bunge, Antwerp, Belgium (1)
1Center for Medical Genetics, Ghent University Hospital, Ghent, 9000, Belgium 2Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences, Ghent (1)
1VIB Center for Medical Biotechnology (CMB), Ghent, 2Belgium Department of Biomolecular Medicine, Ghent University, Ghent, Belgium, 3Cancer Research Institute Ghent (CRIG), Ghent, Belgium. (1)
Amgen (1)
Applied Veterinary Morphology, Department of Veterinary Sciences, University of Antwerp, Belgium (1)
AstraZeneca (1)
Basic Immune System of Plants / Protein Mass SpectrometryMax Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom. (1)
Center for Genomic Regulation (CRG) (1)

IsPrivate

False (8)

Model Flag

Non Kinetic (2)

Submitter Keywords

Immuno-oncology (1)
FROG (1)

Classification

bacteria (11)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (320)
RNA-seq of coding RNA (81)
Comparative genomic hybridization by array (60)
Genotyping by array (33)
ChIP-seq (32)
Methylation profiling by array (13)
RNA-seq of non coding RNA (12)
Unknown experiment type (11)
RNA-seq of coding RNA from single cells (9)
Other (8)
DNA-seq (8)
ChIP-chip by tiling array (5)
Cell line - High-throughput sequencing (5)
Transcription profiling by RT-PCR (4)
Transcription profiling by tiling array (3)
ChIP-chip by array (3)
MicroRNA profiling by array (3)
ChIP-chip by SNP array (2)
Transcription profiling by SAGE (2)
MicroRNA profiling by high throughput sequencing (2)
Hi-C (2)
Exome sequencing (2)
Methyl-seq (1)
Null (1)
Cell line - Single-cell sequencing (1)
RNA-seq of non coding RNA from single cells (1)
One-color microarray (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
High-throughput sequencing (1)

Release Date

2025 (173)
2024 (131)
2022 (118)
2023 (117)
2021 (114)
2015 (103)
2016 (102)
2012 (97)
2014 (94)
2020 (82)
2013 (81)
2011 (73)
2010 (70)
2019 (68)
2017 (52)
2018 (51)
2026 (49)
2008 (37)
2009 (35)
2007 (23)
2006 (11)
2005 (8)
2004 (4)
2003 (4)
2001 (4)
2002 (2)
2000 (2)
1998 (2)

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Quantitative analysis of the exoproteome from a Staphylococcus aureus LAC sarA mutant

The staphylococcal accessory regulator A (sarA) impacts the extracellular accumulation of Staphylococcus aureus virulence factors at the level of intracellular production and extracellular protease-mediated degradation. To assess the relative impact of these two functions, we previously used a prote...

ORGANISM(S): Staphylococcus aureus

2018-11-21 | PXD009614 | Pride

Heliconius sara

PRJNA1102642 | ENA

Heliconius sara

Heliconius sara overview

PRJNA748475 | ENA

ilHelSara

Heliconius sara (Sara longwing), ilHelSara

PRJEB46452 | ENA

iHelSar1

Heliconius sara (Sara longwing) genome assembly iHelSar1

PRJEB46449 | ENA

iHelSar1 alternate haplotype

Heliconius sara (Sara longwing) genome assembly iHelSar1, alternate haplotype

PRJEB46450 | ENA

SarA regulon in S. aureus (ChIP-seq)

PRJNA728654 | ENA

Sara data 06022020 why cant i dothis crap

Sara Dataset of 20 files from GC-MS analysismorecharachtersmorecharactercsetccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2020-02-06 | MSV000084919 | MassIVE

SARA Project - Surveillance of Antimicrobial Resistance in Africa

SARA Project

PRJEB104706 | ENA

Salmonella enterica subsp. enterica serovar Heidelberg str. SARA 39

Salmonella enterica subsp. enterica serovar Heidelberg str. SARA 39 genome sequencing

PRJNA69887 | ENA

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2364 Results

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