Saraswat M M - OmicsDI

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Unknown (91)
Proteomics (35)
Transcriptomics (2)

Organisms

Acidithiobacillus ferrooxidans ATCC 53993 (32)
Aerococcus urinae NBRC 15544 = CCUG 36881 (32)
Allexis (32)
Arabidopsis thaliana (32)
Cyanophora paradoxa (32)
Ensifer adhaerens (32)
Enterococcus faecalis (32)
Globicatella sanguinis (32)
Histomonas meleagridis (32)
Human immunodeficiency virus 1 (32)
Leishmania major strain Friedlin (32)
Listeria monocytogenes (32)
Lotus japonicus (32)
Marchantia polymorpha (32)
Medicago truncatula (32)
Methylohalobius crimeensis 10Ki (32)
Mus musculus (32)
Mycobacterium tuberculosis (32)
Ophrys garganica (32)
Ophrys sphegodes (32)
Oryza sativa Indica Group (32)
Physcomitrium patens (32)
Pseudomonas putida KT2440 (32)
Rattus norvegicus (32)
Schizosaccharomyces pombe 927 (32)
Schizosaccharomyces pombe 972h- (32)
Shigella (32)
Solanum lycopersicum (32)
Staphylococcus aureus (32)
Homo sapiens (2)

Repository

pride (32)
MassIVE (3)
biostudies-arrayexpress (2)

Tissue

Blood plasma (10)
Blood serum (6)
Cell culture (6)
Fibroblast (3)
Blood (2)
Primary cell (2)
Urine (2)
Bile (1)
Brain (1)
Epithelial cell (1)
HeLa cell (1)
Mesenchymal stem cell of the bone marrow (1)
Milk (1)
Nasopharynx (1)
Prostate gland (1)
Semen (1)
Sperm (1)
Tongue epithelium (1)

Disease

Colon cancer (2)
COVID-19 (1)
Congenital disorder of glycosylation (1)
Congenital disorder of glycosylation Iq (1)
Head and neck squamous cell carcinoma (1)
Osteogenesis imperfecta type 3 (1)
Osteogenesis imperfecta type 4 (1)
Polycystic ovary syndrome (1)
Prostate adenocarcinoma (1)
Saul-Wilson syndrome (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (32)
Shotgun proteomics (11)
HDMSE (10)
Bottom-up proteomics (4)
MSE (4)
Data-dependent acquisition (3)
SWATH MS (2)
Affinity purification coupled with mass spectrometry proteomics (1)
All-ion fragmentation (1)
Data-independent acquisition (1)

Instrument Platform

Synapt MS (3)
Illumina NovaSeq 6000 (2)

Publication Date

2022 (7)
2026 (5)
2018 (5)
2023 (4)
2017 (3)
2019 (3)
2025 (2)
2024 (2)
2021 (2)
2020 (2)
2016 (1)

Study type

Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)

Release Date

2025 (15)
2023 (14)
2020 (13)
2021 (12)
2022 (9)
2024 (6)
2018 (5)
2017 (5)
2019 (4)
2026 (3)
2015 (2)
2012 (2)
2016 (1)
2014 (1)
2011 (1)

Lab affiliation

Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States (6)
Transplantation laboratory, Faculty of Medicine, University of Helsinki, Helsinki, 00290, Finland (2)
- Transplantation Laboratory, Haartman Institute, University of Helsinki, Helsinki, Finland - HUSLAB, Helsinki University Hospital, Helsinki, Finland (1)
Academy of Finland Postdoctoral Researcher EV Core and Research Faculty of Pharmacy, Division of Pharmaceutical Biosciences Viikinkaari 9 00014 University of Helsinki, Finland (1)
Akhilesh Pandey, M.D., Ph.D. Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States (1)
Department of Laboratory Medicine and Pathology & Center for Individualized Medicine Mayo Clinic Rochester MN 55905, USA (1)
Department of Laboratory Medicine and Pathology Mayo Clinic 200 First Street SW Rochester, MN 55905, USA (1)
Department of Laboratory Medicine and Pathology Mayo Clinic Rochester Minnesota (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic (1)
Department of Obstetrics and Gynecology PEDEGO Research Unit, Medical Research Center Oulu University Hospital, University of Oulu Kajaanintie 50, BOX 5000, 90014 Oulu, FINLAND (1)
Department of Otorhinolaryngology - Head and Neck Surgery, University of Helsinki and Helsinki University Hospital, Helsinki, Finland (1)
Department of Otorhinolaryngology – Head and Neck Surgery, University of Helsinki and Helsinki University Hospital, Helsinki 00130, Finland and Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm 11382, Sweden (1)
Department of Otorhinolaryngology – Head and Neck Surgery, University of Helsinki and Helsinki University Hospital, Helsinki 00130, Finland and Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm 11382, Sweden (1)
Director Sanford Children’s Health Research Center Sanford Burnham Prebys Medical Discovery Institute 10901 N Torrey Pines Rd, La Jolla, CA 92037 (1)
Division head B230 Proteomics of Stem Cells and Cancer (1)
Faculty of Medicine, University of Helsinki and Helsinki University Hospital, Helsinki, Finland (1)
Professor, Department of Laboratory Medicine and Pathology Center for Individualized Medicine, Mayo Clinic (1)
Sanford Burnham Prebys Medical Discovery Institute (1)
Transplantation Laboratory, Haartman Institute, University of Helsinki and Helsinki University Hospital, Helsinki, Finlan (1)
Transplantation Laboratory, Haartman Institute, University of Helsinki and Helsinki University Hospital, Helsinki, Finland (1)
Transplantation Laboratory, Haartman Institute, University of Helsinki, Finland (1)
Transplantation Laboratory, University of Helsinki & HUSLAB, Helsinki University Hospital, Helsinki, Finland. (1)
Transplantation laboratory and HUSLAB, Haartman Insititute, Univeristy of Helsinki, Finland (1)
Transplantation laboratory, Haartmaninkatu 3, PO Box 21, FI-00014 University of Helsinki, Finland (1)
Transplantation laboratory, Haartmaninkatu 3, PO Box 21, FI-00014 University of Helsinki, Finland. And HUSLAB, Helsinki University Hospital, Finland. (1)
Transplantation laboratory, Univeristy of Helsinki and Helsinki Univeristy Central Hospital (1)

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GBM-Space: Joint Transcriptome and Chromatin Accessibility Profiling of Glioblastoma (10x Genomics - Multiome)

Cancer cells display highly heterogeneous and plastic states in glioblastoma, an incurable brain tumour. However, how these malignant states arise and whether they follow defined cellular trajectories across tumours is poorly understood. Here, we generated a deep single cell and spatial multi-omic a...

ORGANISM(S): Homo sapiens

2026-09-12 | E-MTAB-17183 | biostudies-arrayexpress

Hypoxia-inducible factor prolyl hydroxylase domain (PHD) inhibition after contusive spinal cord injury does not improve locomotor recovery.

Not available

S-EPMC8021188 | biostudies-literature

Production and purification of an alkaline lipase from Bacillus sp. for enantioselective resolution of (±)-Ketoprofen butyl ester.

Not available

S-EPMC6242800 | biostudies-literature

Extracellular vesicles from human plasma and serum are carriers of extravesicular cargo - implications for biomarker discovery

Extracellular vesicles (EVs) may serve as biomarkers for multiple purposes, samples of plasma and serum offer in the form of liquid biopsy a relatively non-invasive means to obtain EV-mediated molecular information. High throughput sampling and analytics for the search of EV-borne biomarkers is faci...

ORGANISM(S): Homo sapiens (Human)

2020-07-21 | PXD015375 | Pride

Spectrum of sensitive skin in India: a collaborative expert position statement.

Not available

S-EPMC12419229 | biostudies-literature

Patients with early stage oropharyngeal squamous cell carcinoma can be identified with label-free serum proteomics

Increased incidence of oropharyngeal squamous cell carcinoma (OPSCC) is mainly related to Human Papilloma Virus (HPV) infection. As OPSCCs are often diagnosed at an advanced stage, mortality and morbidity remain high. There are no diagnostic biomarkers for early stage detection of OPSCC. Serum from...

ORGANISM(S): Homo sapiens (Human)

2018-07-11 | PXD008445 | Pride

Oropharyngeal squamous cell carcinoma serum proteomics multivariate data analysis complement factor h-related protein 2 myosin regulatory light chain 12a

A new firefly algorithm-based superpixel clustering method for vehicle segmentation.

Not available

S-EPMC9190197 | biostudies-literature

Pheno-morphological and biochemical characterization of root nodules and associated root nodulating bacteria from <i>Pongamia pinnata</i> (L.) Pierre in the arid regions of India.

Not available

S-EPMC12756030 | biostudies-literature

Hepatitis E Virus Cysteine Protease Has Papain Like Properties Validated by in silico Modeling and Cell-Free Inhibition Assays.

Not available

S-EPMC6989534 | biostudies-literature