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TranscriptomicsGene Expression on Profiles of Early Ciona intestinalis Embryos
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Ciona intestinalis 
2013-10-29 | E-GEOD-45575 | biostudies-arrayexpress
TranscriptomicsGene expression profiles of individual blastomeres of early Ciona embryos
We examined gene expression profiles of individual blastomeres of early Ciona embryos using microarrays. We examined gene expression profiles of individual blastomeres of the 8-cell, 16-cell and 32-cell embryos by dissecting with a fine glass needle. We also examined gene expression profiles of unfe...
ORGANISM(S): Ciona intestinalis 
2013-10-29 | E-GEOD-45548 | biostudies-arrayexpress
TranscriptomicsGene expression profiles of unfertilized eggs of Ciona intestinalis
The transcriptome of unfertilized eggs of Ciona intestinalis was determined with microarrays. To obtain gene expression profiles of unfertilized eggs, we took 14 biological replicates. For the first through fourth replicates, we also took a technical duplicate. Gene expression profiles of the 8-, 16...
ORGANISM(S): Ciona intestinalis 
2013-10-29 | E-GEOD-45500 | biostudies-arrayexpress
TranscriptomicsComparative analysis of gene expression profiles between four kinds of blastomere at 8-cell stage embryos.
The establishment of body axes and specification of early embryonic cells depend on maternally supplied transcripts and/or proteins, several of which are localized at specific regions of fertilized eggs and early embryos. The ascidian is known to exhibit a mosaic mode of development, and this mode ...
ORGANISM(S): Ciona intestinalis 
2010-06-19 | E-GEOD-15637 | biostudies-arrayexpress
UnknownFoxg specifies sensory neurons in the anterior neural plate border of the ascidian embryo.
Not available
S-EPMC6820760 | biostudies-literature
UnknownUsing linkage logic theory to control dynamics of a gene regulatory network of a chordate embryo.
Not available
S-EPMC7889898 | biostudies-literature
TranscriptomicsFoxA-a ChIP-chip on Ciona intestinalis embryo (64-cell stage)
A genomic overview of in vivo binding of a transcription factor FoxA-a in the ascidian 64-cell stage embryo. Fertilized eggs were electroporated with a construct encoding GFP-tagged FoxA-a. After fixation, Chromatin was sonicated to obtain DNA fragments with an average of size of 1kb. The DNA fragme...
ORGANISM(S): Ciona intestinalis 
2010-03-08 | E-GEOD-17687 | biostudies-arrayexpress
TranscriptomicsNeurogenin ChIP-chip on Ciona intestinalis embryo (64-cell stage)
A genomic overview of in vivo binding of a transcription factor Neurogenin in the ascidian 64-cell stage embryo. Fertilized eggs were electroporated with a construct encoding GFP-tagged Neurogenin. After fixation, chromatin was sonicated to obtain DNA fragments with an average of size of 1kb. The DN...
ORGANISM(S): Ciona intestinalis 
2010-05-06 | E-GEOD-17689 | biostudies-arrayexpress
TranscriptomicsTbx6b ChIP-chip on Ciona intestinalis embryo (early gastrula)
A genomic overview of in vivo binding of a transcription factor Tbx6b in the ascidian early gastrula embryo. Fertilized eggs were electroporated with a construct encoding GFP-tagged Tbx6b. After fixation, chromatin was sonicated to obtain DNA fragments with an average of size of 1kb. The DNA fragmen...
ORGANISM(S): Ciona intestinalis 
2010-05-06 | E-GEOD-17694 | biostudies-arrayexpress
TranscriptomicsFoxD-a/b ChIP-chip on Ciona intestinalis embryo (32-cell stage)
A genomic overview of in vivo binding of a transcription factor FoxD-a/b in the ascidian 32-cell stage embryo. Fertilized eggs were electroporated with a construct encoding GFP-tagged FoxD-a/b. After fixation, chromatin was sonicated to obtain DNA fragments with an average of size of 1kb. The DNA fr...
ORGANISM(S): Ciona intestinalis 
2010-05-06 | E-GEOD-17988 | biostudies-arrayexpress
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