Sc-beta - OmicsDI

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Transcriptomics (566)
Unknown (546)
Genomics (236)
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Organisms

Mus musculus (321)
Homo sapiens (270)
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Mus musculus castaneus (1)
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synthetic construct (1)
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mixed sample (1)
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Organisms

Homo sapiens (51)
Mus musculus (17)
Saccharomyces cerevisiae (5)
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Rattus norvegicus (1)

Repository

biostudies-arrayexpress (635)
ENA (86)
geo (47)
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pride (19)
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Tissue

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Disease

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Technology Type

Mass Spectrometry (22)
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Instrument Platform

Illumina NovaSeq 6000 (63)
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Illumina HiSeq 2500 (12)
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DNBelab C Series High-throughput Single-cell RNA Library Preparation Set V3.0 (MGI Tech) (1)
DNBelab C-TaiM droplet generator (MGI Tech) (1)
Avatarget 12-well dual-chamber organ-on-chip system; AvatarFlow Organ Chip Flow Initiation Controller System (Avatarget Co., Ltd., Suzhou, China) (1)
Bravo automated liquid handling robot station (Agilent) (1)
10X chemistry 3' v3 (1)
I.DOT (Dispendix), C.WASH (CYTENA), Qubit Fluorometer (Thermo Fisher Scientific), Agilent TapeStation 4200 (1)
BD FACSDiscover S8 (1)
Whole Transcriptome v2 kit (1)
10X Genomics Chromium Controller Instrument, Thermocycler (PCR machine), Bioanalyzer 2200 (Agilent), Qubit Fluorometer (Thermo Fisher Scientific) (1)
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2014 (95)
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CHEBI ID

CHEBI:16335 (5)
CHEBI:16467 (5)
CHEBI:15891 (4)
CHEBI:15971 (4)
CHEBI:17053 (4)
CHEBI:25682 (3)
CHEBI:70958 (3)
CHEBI:16040 (3)
CHEBI:16695 (3)
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Metabolite Name

Uridine (4)
Betaine (3)
Choline (3)
Fumaric acid (3)
Adenosine (3)
Porphobilinogen (3)
L-Glutamine (3)
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First Public Date

2025 (24)
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2014 (6)
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2015 (1)
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Study type

Transcription profiling by array (253)
ChIP-seq (103)
RNA-seq of coding RNA (99)
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Other (16)
ChIP-chip by tiling array (9)
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RNA-seq of non coding RNA (7)
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Animal - High-throughput sequencing (2)
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Release Date

2014 (114)
2025 (97)
2015 (87)
2013 (84)
2024 (83)
2016 (68)
2023 (64)
2021 (63)
2010 (63)
2020 (62)
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2011 (48)
2009 (40)
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2017 (20)
2007 (15)
2005 (7)
2006 (6)
2004 (6)
2003 (3)
2002 (2)
2001 (2)
2000 (1)
1999 (1)

Lab affiliation

Division of Genetic and Genomic Medicine, Department of Pediatrics, UPMC Children's Hospital of Pittsburgh, Pittsburgh, USA (3)
Biological Chemistry Section, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, Maryland, United States (1)
Biomolecular Mass Spectrometry and Proteomics Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands, Janssen Infectious Diseases and Vaccines, Crucell Holland B.V., Leiden, the Netherlands (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, 5230 Odense M, Denmark (1)
Department of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA. (1)
Department of Neurosciences, University of Toledo (1)
Harbin medical university (1)
INSTITUT COCHIN Inserm U1016, CNRS UMR 8104, Université Paris Dsecartes, Sorbonne Paris Cité, France (1)
Institute of Diabetes and Obesity, Helmholtz Munich, Neuherberg, Germany (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)
Mass spectrometry of Biomacromolecules, SILS, Universiteit van Amsterdam, The Netherlands (1)
NNF CPR, Copenhagen Univeristy, Denmark (1)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
Rudolf Buchheim Institute of Pharmacology, Justus Liebig University, Giessen, D-35392, Germany (1)
Synapse Development and Plasticity Research Unit, Institut de Recherches Cliniques de Montréal, Montreal, Quebec, H2W 1R7, Canada Integrated Program in Neuroscience, McGill University, Montreal, Quebec, H3A 2B2, Canada Department of Medicine, Université de Montréal, Montreal, Quebec, H3T 1J4, Canada Division of Experimental Medicine, McGill University, Montreal, Quebec, H3A 0G4, Canada (1)
Turku Bioscience, University of Turku and Åbo Akademi University (1)
University of Rhode Island (1)

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SC-beta vs SC-EC +/- IFN-G

PRJNA822636 | ENA

SC-beta Cell in vivo Maturation

PRJNA560712 | ENA

RNA Seq of IAPP expressing SC-β cells

PRJNA1096942 | ENA

Infection of SC-beta cells with coxsackievirus B4 (CVB)

PRJNA605945 | ENA

SC-beta vs SC-EC +/- IFN-G

The goal of this study was to identify transcriptional changes in SC-beta and SC-endothelial cells pre and post IFN-gamma stimulation. Specifically, to characterize the differential expression of immune cell ligands in these cells with respect to a partial inflammatory stimulus.

ORGANISM(S): Homo sapiens

2022-12-23 | GSE200021 | GEO

SC-beta Cell in vivo Maturation

Stem cell-derived β (SC-β) cells are an emerging regenerative therapy to compensate for loss of functional β cell mass in diabetes. Glucose-stimulated insulin secretion in SC-β cells is variable in vitro but stabilizes after transplantation and maturation under the kidney capsule of mice. We identif...

ORGANISM(S): Homo sapiens

2019-08-19 | GSE135944 | GEO

RNA Seq of IAPP expressing SC-β cells

Islet transplantation for treatment of diabetes is limited by availability of donor islets and requirements for immunosuppression. Stem cell-derived islets might circumvent these issues. SC-islets effectively control glucose metabolism post transplantation, but do not yet achieve full function in vi...

ORGANISM(S): Homo sapiens

2024-04-15 | GSE263366 | GEO

Infection of SC-beta cells with coxsackievirus B4 (CVB)

SC-beta cells were infected with CVB and collected over a time course.

ORGANISM(S): Homo sapiens

2020-02-12 | GSE145074 | GEO

LINC MIR503HG Controls SC-β Cell Differentiation and Insulin Production by Targeting CDH1 and HES1.

Not available

S-EPMC10987150 | biostudies-literature

Beta-D-glucoside utilization by Mycoplasma mycoides subsp. mycoides SC: possible involvement in the control of cytotoxicity towards bovine lung cells.

Not available

S-EPMC1855930 | biostudies-literature

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