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TranscriptomicsHaeusler LL_HL shift A. thaliana
Wild-type (Col-0) and mutant plants (adg1-1, tpt-2, adg1-1/tpt-2) were grown for 28 days under low light conditions and were then transferred to HL. Leaf samples for transcriptional profiling were taken at time 0 (before transfer to high light) and 4 hours and 48 hours (2 days) after transfer to hig...
ORGANISM(S): Arabidopsis thaliana 
2014-02-01 | E-MEXP-3791 | biostudies-arrayexpress
GenomicsCTCF/CP190 and ISWI dependent regulation of nucleosome occupancy [MNase-seq]
MNase-seq was performed in order to analyze changes in nucleosomal occupancy after depletion of CTCF/P190 and ISWI from Drosophila S2 cells MNase-seq from Drosophila S2 nuclei after CTCF/CP190 or ISWI-specific RNAi treatment
ORGANISM(S): Drosophila melanogaster 
2014-08-11 | E-GEOD-51599 | biostudies-arrayexpress
GenomicsCTCF/CP190 and ISWI dependent regulation of nucleosome occupancy [ChIP-seq]
H3-ChIP-seq was performed in order to analyze changes in nucleosomal occupancy after depletion of CTCF/P190 and ISWI from Drosophila S2 cells Histone H3 ChIP-seq from Drosophila S2 cells after CTCF/CP190 or ISWI-specific RNAi treatment
ORGANISM(S): Drosophila melanogaster 
2014-08-11 | E-GEOD-51598 | biostudies-arrayexpress
TranscriptomicseIF3a in Urinary Bladder Cancer M-bM-^@M-^S in vivo and in vitro insights
The eukaryotic translation initiation factor (eIF) 3a is described in various tumor entities as potential tumor marker involved in development and progression of cancer. eIF3a is the largest subunit of the eIF3 complex, a key functional entity in 80S establishment and translation initiation. We hypo...
ORGANISM(S): Homo sapiens 
2014-08-12 | E-GEOD-45636 | biostudies-arrayexpress
GenomicsCTCF/CP190 and ISWI dependent regulation of nucleosome occupancy
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Drosophila melanogaster 
2014-08-11 | E-GEOD-51600 | biostudies-arrayexpress
TranscriptomicsGenome-wide copy number analysis of patient-derived gliobastoma cell cultures
Genome-wide copy number variation profiles were analyzed in the patient-derived gliobastoma cell culture samples. For this purpose, gDNA was analyzed using the CytoScan® assay in combination with a one-color based labeling and hybridization protocol. Signals on the CytoScan® HD microarrays were dete...
ORGANISM(S): Homo sapiens 
2021-07-07 | E-MTAB-9341 | biostudies-arrayexpress
GenomicsAmplicon-based targeted re-sequencing analysis of target genes in human DNA samples using the Illumina TruSeq Custom Amplicon technology
Amplicon-based targeted re-sequencing analysis was performed in the patient-derived gliobastoma cell culture samples. For this purpose, genomic DNA (gDNA) was isolated and DNA libraries were prepared using the TruSeq Custom Amplicon Low Input (Illumina, Inc.) technology. By this, a pool of 375 ampli...
ORGANISM(S): Homo sapiens 
2021-07-07 | E-MTAB-9343 | biostudies-arrayexpress
TranscriptomicsRNA sequencing of mouse samples using the Illumina TruSeq® Stranded mRNA technology and the NextSeq500 next generation sequencing system
RNA sequencing analysis was performed on mouse cell samples. Quality control of total RNA samples after RNA isolation with the Agilent Bioanalyzer revealed acceptable RNA quality for 12 out of 30 provided samples. Libraries were successfully prepared from these RNA samples using the Illumina TruSeq®...
ORGANISM(S): Mus musculus 
2021-07-07 | E-MTAB-9353 | biostudies-arrayexpress
MetabolomicsMetabolic signatures of Arabidopsis thaliana abiotic stress responses elucidate patterns in stress priming, acclimation, and recovery

Temperature, water and light are 3 abiotic stress factors that have major influences on plant growth, development and reproduction. Plants can be primed by a prior mild stress to enhance their resistance to future stress. We used an untargeted metabolomics approach to examine Arabidopsis thal...

2022-05-30 | MTBLS3672 | MetaboLights
UnknownCommon variants in Alzheimer's disease and risk stratification by polygenic risk scores.
Not available
S-EPMC8184987 | biostudies-literature
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