Scott K M KM - OmicsDI

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Unknown (484)
Genomics (29)
Proteomics (4)
Transcriptomics (3)
Metabolomics (2)
Multiomics (1)

Organisms

Homo sapiens (30)
Mus musculus (3)
Helicobacter pylori (1)
Streptococcus pneumoniae (1)
Escherichia coli K-12 (1)

Repository

EGA (26)
biostudies-arrayexpress (6)
pride (3)
MetaboLights (2)
MassIVE (1)

Tissue

Blood (1)
Cell culture (1)
Fibroblast (1)
Monocyte (1)
Primary cell (1)

Disease

Adult respiratory distress syndrome (1)
Developmental and epileptic encephalopathy 9 (1)

Technology Type

Mass Spectrometry (3)
Mass spectrometry (2)
SWATH MS (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
Data-independent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Q Exactive (2)
Illumina MiSeq (1)
Flow injection analysis MS – POS (1)
Liquid Chromatography MS – NEG (1)
Liquid Chromatography MS – POS (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2013 (2)
2010 (2)
2024 (2)
2019 (1)
2011 (1)
2018 (1)
2026 (1)
2023 (1)
2022 (1)

CHEBI ID

CHEBI:15354 (2)
CHEBI:15428 (2)
CHEBI:15603 (2)
CHEBI:15676 (2)
CHEBI:15729 (2)
CHEBI:15760 (2)
CHEBI:15891 (2)
CHEBI:15940 (2)
CHEBI:15971 (2)
CHEBI:15999 (2)
CHEBI:16015 (2)
CHEBI:16344 (2)
CHEBI:16349 (2)
CHEBI:16411 (2)
CHEBI:16414 (2)
CHEBI:16467 (2)
CHEBI:16610 (2)
CHEBI:16643 (2)
CHEBI:16675 (2)
CHEBI:16704 (2)
CHEBI:16737 (2)
CHEBI:16765 (2)
CHEBI:16797 (2)
CHEBI:16828 (2)
CHEBI:16857 (2)
CHEBI:16919 (2)
CHEBI:16977 (2)
CHEBI:17053 (2)
CHEBI:17084 (2)
CHEBI:17115 (2)

Metabolite Name

(N6+N1)-Acetyl-Lys (1)
1,3,7-trimethylurate (1)
1,3-dimethylurate (1)
1,3-propanediol (1)
1,4-butanediol (1)
1,7-dimethylurate (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-linoleoyl-GPC (18:2) (1)
1-methyl-4-imidazoleacetate (1)
1-methylguanidine (1)
1-methylnicotinamide (1)
1-methylurate (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-palmitoyl-2-docosahexaenoyl-GPC (16:0/22:6) (1)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1)* (1)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (1)
1-palmitoyl-GPC (16:0) (1)
1-palmitoyl-GPE (16:0) (1)
1-stearoyl-2-arachidonoyl-GPC (18:0/20:4) (1)
1-stearoyl-2-linoleoyl-GPC (18:0/18:2)* (1)
1-stearoyl-2-oleoyl-GPC (18:0/18:1) (1)
16alpha-hydroxy DHEA 3-sulfate (1)
17alpha-hydroxypregnenolone 3-sulfate (1)
2'-O-methyluridine (1)
2'-deoxycytidine (1)
2'-deoxyguanosine (1)

Study type

ChIP-seq (3)
Transcription profiling by array (2)
RNA-seq of coding RNA (1)

Release Date

2023 (49)
2021 (49)
2024 (48)
2025 (43)
2022 (43)
2020 (43)
2015 (39)
2019 (37)
2018 (29)
2017 (26)
2014 (17)
2016 (16)
2013 (13)
2011 (11)
2012 (10)
2010 (6)
2009 (5)
2008 (3)
2004 (2)
2026 (1)

Lab affiliation

CIR, Queen’s Medical Research Institute, University of Edinburgh (1)
Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL 60637 Institute for Biophysical Dynamics, The University of Chicago, Chicago, IL 60637. (1)
University of Melbourne, Melbourne, Australia (1)

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GGC Repeat Expansion and Exon 1 Methylation of XYLT1 Is a Common Pathogenic Variant in Baratela-Scott Syndrome.

Not available

S-EPMC6323552 | biostudies-literature

The metalloregulatory site in Streptococcus pneumoniae AdcR, a zinc-activated MarR-family repressor

Streptococcus pneumoniae D39 AdcR (adhesion competence repressor) is the first metal-sensing member of the MarR (multiple antibiotic resistance repressor) family to be characterized. Expression profiling of a âˆ†adcR strain grown in liquid culture under microaerobic conditions revealed that transcr...

ORGANISM(S): Streptococcus pneumoniae

2010-10-01 | E-GEOD-21506 | biostudies-arrayexpress

PTEN and the PTEN-like phosphatase CnrN have both distinct and overlapping roles in a Dictyostelium chemorepulsion pathway.

Not available

S-EPMC11317092 | biostudies-literature

Incident heart failure and recurrent coronary events following acute myocardial infarction.

Not available

S-EPMC12011519 | biostudies-literature

Identification of HP0244 regulon at different pH conditions

Transcriptional profiling of Helicobacter pylori comparing 26695 wild-type strain and a HP0244-deficient mutant 26695/âˆ†HP0244::km treated at three different pH conditions (pH 7.4, pH 4.5 without urea, or pH 2.5 with 30 mM urea) for 30 min to define the HP0244 acid-responsive regulon Keywords: Gen...

ORGANISM(S): Helicobacter pylori

2010-05-05 | E-GEOD-12900 | biostudies-arrayexpress

Activity and anion inhibition studies of the α-carbonic anhydrase from Thiomicrospira crunogena XCL-2 Gammaproteobacterium.

Not available

S-EPMC5358508 | biostudies-literature

The metalloregulatory zinc site in Streptococcus pneumoniae AdcR, a zinc-activated MarR family repressor.

Not available

S-EPMC2949468 | biostudies-literature

Distribution of the pco Gene Cluster and Associated Genetic Determinants among Swine Escherichia coli from a Controlled Feeding Trial.

Not available

S-EPMC6211086 | biostudies-literature

Declining Comprehensiveness of Services Delivered by Canadian Family Physicians Is Not Driven by Early-Career Physicians.