Scramble - OmicsDI

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Homo sapiens (527)
Mus musculus (209)
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CHEBI ID

CHEBI:137451 (1)
CHEBI:137450 (1)
CHEBI:137448 (1)
CHEBI:50593 (1)
CHEBI:137452 (1)
CHEBI:137453 (1)
CHEBI:50591 (1)
CHEBI:27809 (1)
CHEBI:52972 (1)
CHEBI:40813 (1)
CHEBI:18101 (1)
CHEBI:73218 (1)
CHEBI:83054 (1)
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CHEBI:7676 (1)
CHEBI:16870 (1)
CHEBI:16856 (1)
CHEBI:17862 (1)
CHEBI:76078 (1)
CHEBI:73024 (1)
CHEBI:6650 (1)
CHEBI:17858 (1)
CHEBI:15891 (1)

Metabolite Name

PE(12:0/16:0) (1)
Ergosta-5,7,24(28)-trien-3beta-ol (1)
(2S,3S,4R)-2-aminohexadecane-1,3,4-triol (1)
3-dehydro-4-methylzymosterol (1)
Palmitoleic acid (1)
Ergosterol (1)
PI(18:0/0:0) (1)
Creatine (1)
Sphingosine (1)
Butyrylcarnitine (1)
PA(14:0/16:1(9Z)) (1)
Glutathione (1)
4beta-methylzymosterol-4alpha-carboxylic acid (1)
PA(14:1(9Z)/16:0) (1)
3-Dehydrosphinganine (1)
Phosphocholine (1)
Acetylcarnitine (1)
Glutamic acid (1)
Uracil (1)
Glycerophosphocholine (1)
L-Leucine (1)

First Public Date

2024 (124)
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2022 (81)
2014 (80)
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2026 (76)
2021 (64)
2019 (52)
2020 (48)
2018 (47)
2017 (45)
2016 (27)
2015 (23)
2013 (10)

Classification

bacteria (1)

Modification

4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (143)
RNA-seq of coding RNA (37)
ChIP-seq (11)
RNAi profiling by array (5)
RNA-seq of total RNA (4)
Other (3)
Cell line - High-throughput sequencing (2)
RNA-seq of non coding RNA (2)
Cell line - One-color microarray (1)
Transcription profiling by tiling array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
ATAC-seq (1)
Methylation profiling by array (1)
CUT&RUN (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2016 (52)
2015 (50)
2013 (44)
2014 (41)
2023 (34)
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2020 (30)
2021 (27)
2017 (26)
2018 (26)
2019 (25)
2024 (22)
2011 (21)
2012 (21)
2010 (10)
2009 (7)
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2008 (5)
2007 (2)
2001 (2)
2002 (1)

Lab affiliation

The University of Melbourne (2)
3Plateforme Protéomique 3P5-Necker, Structure Fédérative de Recherche Necker and Université Paris Descartes, INSERM US24/CNRS UMS3633, Paris, (1)
Academy for Advanced Interdisciplinary Studies, Center for Quantitative Biology (CQB), Peking University, China (1)
Assistant Professor of Pediatrics Assistant Professor of Pharmacology & Toxicology Indiana University School of Medicine (1)
CICS-UBI–Health Sciences Research Center, Universidade da Beira Interior, 6201-506 Covilhã, Portugal (1)
Cardiovascular and Metabolic Diseases, Duke-NUS Medical School, Singapore (1)
Cell Biophysics, Nencki Institute, Warsaw, Poland (1)
Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, 3584 CG Utrecht, The Netherlands. (1)
Chronic Disease Programme, UFIEC, Instituto de Salud Carlos III, 28220 Majadahonda, Madrid, Spain (1)
Department of Biology, Technische Universität Darmstadt, 64287 Darmstadt, Germany Institute of Pharmaceutical Chemistry, Goethe Universität Frankfurt, 60438 Frankfurt/M., Germany (1)
Department of Microbiology & Immunology, Cornell University College of Veterinary Medicine (1)
Department of Molecular Pharmacology, Einstein Institute of Neuroimmunology and Inflammation, Albert Einstein College of Medicine, Bronx, NY 10461, USA (1)
DiSFeB, Dipartimento di Scienze Farmacologiche e Biomolecolari, Università degli Studi di Milano, Milano, 20133, Italy, (1)
EPFL (1)
Institute of Genetic Medicine, Johns Hopkins University School of Medicine (1)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
King's College London School of Cardiovascular and Metabolic Medicine & Sciences James Black Centre 125 Coldharbour Lane, London, SE5 9NU (1)
Laboratoire de Recherche en Sciences Végétales, CNRS/UPS, 31320 Auzeville-Tolosane, France (1)
Laboratory of Animal Histology, Faculty of Biology, “Alexandru Ioan Cuza” University of Iasi, Carol I Bvd. No. 22, Iasi 700505, Romania (1)
Medizinisches Proteom-Center Gesundheitscampus 4 44801 Bochum (1)
New York University (1)
Professor of Anatomy & Cell Biology (in Physiology and Cellular Biophysics) Columbia University Irving Medical Center (1)
Proteomic Hematology Division of Molecular Hematology Lund Stem Cell Center, Lund University BMC B12, 221 84 Lund, Sweden (1)
Proteomic Hematology, Department of Experimental Medical Science, Lund Stem Cell Center, Lund University (1)
Proteomics, Leibniz-Institut für analytische Wissenschaften -ISAS - e.V., Germany (1)
Roskilde University, Denmark Institute for Science and Environment Molecular and Medical Biology (1)
School of Natural Sciences, and ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, Australia. The Australian Genome Foundry, Sydney, Australia. (1)
Stem Cell and Cancer Research Institute McMaster University (1)
The Jackson Laboratory For Genomic Medicine (1)
University of Illinois, Urbana Champaign (1)

Tags

pathogen (1)
pathogen:bacterium (1)

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U937 scramble vs shHDAC2 upon SAHA (Vorinostat; suberoylanilide hydroxamic acid) treatment

Transcriptional profiling of U937 scramble vs shHDAC2 before and after SAHA treatment at 5ÂµM concentration for 6 and 24 hours. Different Experimental Conditions: U937 scramble (U937 trasfected with empty vector) vs shHDAC2 (U937 trasfected with shHDAC2 vector), untreated and treated with SAHA at 5 ...

ORGANISM(S): Homo sapiens

2015-02-18 | E-GEOD-37529 | biostudies-arrayexpress

Murine hippocampus: Scramble (control) vs Antagomir-134

PRJNA699257 | ENA

Expression profile of miR-101 transfection in MCF-7 cells compared with scramble control

Autophagy is an evolutionarily conserved mechanism of cellular self-digestion in which proteins and organelles are degraded through delivery to lysosomes. Defects in this process are implicated in numerous human diseases including cancer. To further elucidate regulatory mechanisms of autophagy, we p...

ORGANISM(S): Homo sapiens

2011-08-19 | E-GEOD-31397 | biostudies-arrayexpress

Iterative SCRaMbLE for engineering synthetic genome modules and chromosomes.

Not available

S-EPMC12331891 | biostudies-literature

SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes.

Not available

S-EPMC4691749 | biostudies-literature

Ring synthetic chromosome V SCRaMbLE.

Not available

S-EPMC6141504 | biostudies-literature

The Scramble conversion tool.