Sd rat - OmicsDI

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Unknown (1093)
Transcriptomics (403)
Genomics (326)
Proteomics (64)
Metabolomics (42)
Other (2)
Clinical (1)
Methylation profiling (1)
Multiomics (1)

Organisms

Rattus norvegicus (255)
Mus musculus (60)
Homo sapiens (51)
Streptococcus pneumoniae D39 (8)
Saccharomyces cerevisiae (6)
Arabidopsis thaliana (6)
Fagus sylvatica (4)
Xylella fastidiosa (3)
Oryza sativa (2)
Gallus gallus (2)
Sus scrofa (2)
Nasonia giraulti (1)
Chenopodium amaranticolor (1)
Fucus vesiculosus (1)
Streptococcus pyogenes M49 591 (1)
Theileria parva (1)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (1)
Paramecium bursaria Chlorella virus 1 (1)
Rhizobium etli CFN 42 (1)
Populus balsamifera (1)
Carassius auratus (1)
Pimephales promelas (1)
Streptococcus mutans UA159 (1)
Schizosaccharomyces pombe 972h- (1)
Daphnia magna (1)
Staphylococcus aureus subsp. aureus USA300 (1)
Xenopus laevis (1)
Picea glauca (1)
Cyprinus carpio (1)
Schistosoma mansoni (1)

Organisms

Rattus norvegicus (214)
rat gut metagenome (15)
Rattus (5)
Homo sapiens (4)
Rattus rattus (2)
unidentified (2)
rat metagenome (1)
skin metagenome (1)
Sus scrofa (1)

Repository

biostudies-arrayexpress (343)
ENA (306)
geo (84)
pride (50)
MetaboLights (41)
iProX (8)
MassIVE (4)
jPOST (1)
MetabolomicsWorkbench (1)
PanoramaPublic (1)

Tissue

Liver (7)
Brain (6)
Heart (5)
Kidney (4)
Lung (4)
Cell culture (2)
Colon (2)
Nasal mucosa (2)
Primary cell (2)
Retina (2)
Blood (1)
Blood serum (1)
Cardiac muscle cell (1)
Endothelial cell of sinusoid (1)
HEK-293T cell (1)
Hair (1)
Hair shaft (1)
HeLa cell (1)
Kupffer cell (1)
Layer of retina (1)
Leg muscle (1)
Nerve cord (1)
Ovarian serous carcinoma cell (1)
Pancreas (1)
Permanent cell line cell (1)
Sensory neuron of dorsal root ganglion (1)
Skin (1)
Specialized cardiac myocyte (1)
Spinal cord (1)
Spinal root (1)

Disease

Burn injury (1)
Hypertensive (1)
Normal (1)
Neuroblastoma (1)
Colorectal Neoplasms (1)
Breast cancer (1)
Chronic kidney disease (1)
Diabetes mellitus (1)
Disease free (1)
Glaucoma (1)
Malignant neoplasm of ovary (1)
Mixed disorder as reaction to stress (1)
Schizophrenia (1)
Sciatic nerve (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (51)
Shotgun proteomics (34)
Mass spectrometry (28)
Mass spectrometry assay (12)
Top-down proteomics (5)
Bottom-up proteomics (4)
Data-dependent acquisition (4)
Data-independent acquisition (4)
SWATH MS (2)
NMR spectroscopy (1)
ESI (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
Metaproteomics (1)
Proteogenomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (9)
Liquid Chromatography MS - positive - reverse phase (9)
Illumina NovaSeq 6000 (7)
LTQ Orbitrap Classic (Thermo Scientific) (5)
Liquid Chromatography MS - positive - reverse-phase (5)
Liquid Chromatography MS - negative - reverse-phase (5)
Liquid Chromatography MS - alternating - reverse-phase (3)
Scanning hardware (2)
Illumina HiSeq 2000 (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
MA900, Sony (1)
10x Chromium Controller (1)
Illumina TruSeq Small RNA Sample kit (1)
TRIzol reagent (1)
Illumina Genome Analyzer II (1)
Illumina MiniSeq (1)
HiSeq X Ten (1)
Illumina HiSeq 2500 (1)
LTQ (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap XL (1)
Q Exactive HF (1)
Liquid Chromatography MS - alternating - reversed-phase-chromatography (1)
Flow Injection Analysis MS - Positive (FIA-MS (Positive)) (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)

Publication Date

2013 (52)
2010 (52)
2014 (46)
2015 (44)
2012 (37)
2011 (33)
2008 (27)
2026 (25)
2016 (25)
2024 (22)
2021 (22)
2007 (20)
2023 (18)
2022 (17)
2009 (15)
2025 (14)
2018 (13)
2020 (12)
2017 (11)
2019 (7)
2005 (6)
2006 (3)
2004 (3)
2003 (2)

CHEBI ID

CHEBI:17368 (12)
CHEBI:16704 (11)
CHEBI:16737 (11)
CHEBI:73061 (10)
CHEBI:17126 (10)
CHEBI:17750 (10)
CHEBI:15891 (10)
CHEBI:18237 (10)
CHEBI:28867 (10)
CHEBI:73024 (10)
CHEBI:17268 (10)
CHEBI:17562 (10)
CHEBI:17154 (10)
CHEBI:16919 (10)
CHEBI:30769 (10)
CHEBI:70959 (9)
CHEBI:16708 (9)
CHEBI:28044 (9)
CHEBI:68830 (9)
CHEBI:70749 (9)
CHEBI:18211 (9)
CHEBI:43355 (9)
CHEBI:6650 (9)
CHEBI:7676 (9)
CHEBI:7916 (9)
CHEBI:21547 (9)
CHEBI:16761 (9)
CHEBI:16027 (9)
CHEBI:16335 (9)
CHEBI:73054 (9)

Metabolite Name

Creatinine (16)
Uridine (14)
Taurine (13)
Hypoxanthine (13)
Uracil (12)
Adenosine (12)
Xanthine (11)
Creatine (11)
Betaine (10)
Citrulline (10)
AMP (9)
Choline (9)
Cholic acid (9)
L-Proline (9)
Cytosine (9)
Riboflavin (9)
Inosine (9)
Heptadecanoic acid (8)
Kynurenic acid (8)
Ornithine (8)
Benzoic acid (8)
L-Threonine (8)
Allantoin (8)
Indole (8)
Xanthosine (8)
Valeric acid (8)
Oleamide (8)
Threonine (8)
Phosphorylcholine (8)
Linoleic acid (8)

First Public Date

2014 (40)
2023 (39)
2026 (37)
2024 (36)
2021 (30)
2022 (28)
2025 (25)
2020 (16)
2019 (16)
2018 (13)
2015 (11)
2017 (8)
2016 (4)
2013 (3)

Study status

Completed (1)

Study type

Transcription profiling by array (269)
Unknown experiment type (20)
RNA-seq of coding RNA (19)
ChIP-seq (5)
Other (4)
Transcription profiling by RT-PCR (3)
Methylation profiling by array (3)
RNA-seq of non coding RNA (3)
Animal - One-color microarray (2)
ChIP-chip by tiling array (2)
Animal - High-throughput sequencing (2)
Comparative genomic hybridization by array (2)
RNA-seq of coding RNA from single cells (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by MPSS (1)
Transcription profiling by SAGE (1)
CLIP-Seq (1)
RNA-seq of total RNA (1)
Interventional (1)

Release Date

2022 (141)
2021 (123)
2020 (110)
2023 (104)
2024 (95)
2025 (87)
2014 (83)
2015 (82)
2019 (77)
2013 (76)
2017 (68)
2010 (62)
2016 (56)
2018 (55)
2012 (51)
2011 (50)
2008 (34)
2007 (22)
2009 (19)
2026 (14)
2005 (9)
2004 (6)
2006 (4)
2003 (3)
2002 (2)
2000 (2)
1996 (1)

Lab affiliation

Director of PEL @ Caltech (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 NeuchÃƒÂ¢tel, Switzerland (part of Philip Morris International group of companies) (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland (part of Philip Morris International group of companies) (2)
Associate professor, Department of Biomedical laboratory sciences and chemical engineering, Bergen University College, Bergen, Norway. (1)
Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA (1)
ChemCentre, Forensic Science Laboratory, Building 500, Curtin University, Bentley, WA, Australia, 6102 (1)
College of Integrated Chinese and Western Medicine, Fujian University of Traditional Chinese Medicine, Fuzhou, China (1)
College of Pharmacy and Pharmaceutical Sciences, Washington State University, Spokane, WA 99202, USA (1)
Department of Cell and Regenerative Biology, Department of Chemistry, University of Wisconsin-Madison (1)
Department of Chemistry, Johns Hopkins University (1)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (1)
Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, UK (1)
Department of Thoracic Surgery, First Affiliated Hospital of Kunming Medical University, Kunming 650000, Yunnan, China. (1)
Director Dept. Proteomics and Signal Transduction Max Planck Institute of Biochemistry (1)
Director of PEL, CalTech (1)
Experimental Ophthalmology, Department of Ophthalmology, Mainz, Rheinland-Pfalz, Germany (1)
Fondazione Ri.MED (1)
Fondazione Ri.Med Department of Laboratory Medicine and Advanced Biotechnologies, Istituto Mediterraneo per i Trapianti e Terapie ad Alta Specializzazione (IRCCS - ISMETT) Via Ernesto Tricomi, 5 - 90127 Palermo (1)
Forensic Science Laboratory, Chemcentre, Western Australia (1)
G44, Biosciences Building| Institute of Integrative Biology University of Liverpool Crown Street | Liverpool | L69 7ZB United Kingdom (1)
Genecology Research Centre, University of the Sunshine Coast (1)
Head of Cell Signalling Unit, Children's Medical Research Institute, The University of Sydney Co-Director of ProCan - The ACRF International Centre for the Proteome of Human Cancer Co-Director of ACRF Centre for Kinomics (1)
Institut für Biologische Informationsprozesse Molekular- und Zellphysiologie (IBI-1) Forschungszentrum Jülich 52425 Jülich Germany (1)
Institute for Molecular Biosciences, The University of Queensland (1)
Institute of Agri-food Processing and Nutrition, Beijing Academy of Agriculture and Forestry Sciences (1)
Institute of Chemistry, Academia Sinica (1)
Institute of Medical Biology, Faculty of Health, UiT/The Arctic University of Norway (1)
Institute of Physiology II Universität Freiburg Germany (1)
Key Laboratory of Neuroregeneration, Nantong University, Nantong, China. (1)
Laboratory of Fundamental Research, The Korean Ginseng Research Institute, Korean Ginseng Corp. (1)

Location

United States (1)

Keyword

Phase II (1)
Sorafenib (1)
Rectal Cancer (1)
CRC (1)
Cetuximab (1)

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Rat serum transcriptomic data

study investigated the anti-fatigue effect of the Panax ginseng–Astragali Radix (GGJ) herb pair, the core functional unit of Baoyuan Decoction, using a rat fatigue model induced by forced swimming. Serum samples were collected for untargeted metabolomics analysis by LC-MS/MS to profile differenti...

2026-06-30 | MTBLS14902 | MetaboLights

Podophyllotoxin-induced nephrotoxicity via the microbiota-gut-kidney axis in SD rats based on the toxicological evidence chain (TEC) concept

Podophyllotoxin (PPT) exhibits limited clinical utility due to its nephrotoxicity, and its underlying mechanisms remain poorly understood. This study employs the toxicological evidence chain (TEC) framework and integrated multi-omics analyses to investigate the potential involvement of the microbiot...

2026-06-25 | MTBLS14854 | MetaboLights

Untargeted gas chromatography–mass spectrometry-based metabolomics analysis of kidney and liver tissue from the Lewis Polycystic Kidney rat

Polycystic kidney disease (PKD) encompasses a spectrum of inherited disorders that lead to end-stage renal disease (ESRD). There is no cure for PKD and current treatment options are limited to renal replacement therapy and transplantation. A better understanding of the pathobiology of PKD is needed ...

2023-01-26 | MTBLS748 | MetaboLights

Metabolomics dataset of PPAR-pan treated rat liver (eicosanoid assay)

This article contains mass spectrometry (MS) data investigating small molecule changes as an effect of a triple peroxisome proliferator-activated receptor (PPAR-pan) agonist GW625019 in the liver as described in the manuscript “PPAR-pan Activation Induces Hepatic Oxidative Stress and Lipidomic Re...

2016-05-13 | MTBLS278 | MetaboLights

Untargeted metabolomics profiling of esophageal tissues from a rat model of reflux esophagitis treated with Shunwei Jiangni Decoction

This dataset contains raw untargeted metabolomics data generated from esophageal tissue samples of rats in a reflux esophagitis (RE) model. The study aimed to characterize metabolic alterations associated with RE pathogenesis and to evaluate the regulatory effects of Shunwei Jiangni Decoction (SW...

2026-04-10 | MTBLS14112 | MetaboLights

Rattus norvegicus strain:SD

Rattus norvegicus strain:SD Raw sequence reads

PRJNA473272 | ENA

Metabolomics dataset of PPAR-pan treated rat liver (acyl-carnitine and aqueous metabolite assays)

2016-05-13 | MTBLS303 | MetaboLights

SD rat

SD rat Raw sequence reads

PRJNA975055 | ENA

Quick Comparison of Serum Metabolites in SD Rats of Different Sex by Untargeted UPLC-TOFMS and In-house Software Platform

Not available

ORGANISM(S): Rattus norvegicus