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MetabolomicsMetabolome patterns identify active dechlorination in bioaugmentation consortium SDC-9

Ultra-high performance liquid chromatography-high resolution mass spectrometry (UPHLC-HRMS) is used to discover and monitor single or sets of biomarkers informing about metabolic processes of interest. The technique can detect thousands of molecules (i.e., metabolites) in a single instrument run ...

2022-09-16 | MTBLS5219 | MetaboLights
TranscriptomicsRNA-sequencing of abdominal fat body-enriched tissue of Drosophila fat body-specific Sdc RNAi knockdown and control
We report the transcriptome profile of one sequenced sample of mRNA isolated from pooled (20 from each genotype) abdomen fly extracts enriched in fat body content of fat body-specific Sdc RNAi knockdown and control flies Abdominal fat body mRNA profiles of 4-6-day old control and fat body-specific ...
ORGANISM(S): Drosophila melanogaster 
2016-06-30 | E-GEOD-67001 | biostudies-arrayexpress
GenomicsCaenorhabditis briggsae SDC-2 and DPY-27 ChIP-seq
Caenorhabditis briggsae SDC-2 and DPY-27 ChIP-seq
PRJNA886730 | ENA
TranscriptomicsExamination of DPY-30, DPY-27, SDC-3, DPY-26, MIX-1, SMC-4, ASH-2, RNA Polymerase II binding in wild type and DCC mutant embryos
Here we exploit the essential process of X-chromosome dosage compensation to elucidate basic mechanisms that control the assembly, genome-wide binding, and function of gene regulatory complexes that act over large chromosomal territories. We demonstrate that a subunit of C. elegans MLL/COMPASS, a g...
ORGANISM(S): Caenorhabditis elegans 
2011-03-01 | E-GEOD-25833 | biostudies-arrayexpress
ProteomicsEnrichment of Cysteine S-palmitoylated peptides using Sodium Deoxycholate Acid Precipitation - SDC-ACE
S-palmitoylation is a poorly understood post-translational modification that is gaining more attention as an essential regulator of cellular processes. The reversible nature of S-palmitoylation allows for fine-tuned control of cellular events and adaptation to stimuli. The enrichment of S-palmitoyla...
ORGANISM(S): Mus musculus (Mouse) Acyrthosiphon pisum (Pea aphid) 
2026-02-16 | PXD054682 | Pride
Cysteine palmitoylation  mouse brain palmitoylome  dbdb mice  mouse tissue specific palmitoylation 
TranscriptomicsExamination of DPY-30, DPY-27, SDC-3, DPY-26, DPY-28, SDC-2, and SUMOylated DPY-27 binding in wild type embryos and smo-1 RNAi treated embryos
The essential process of dosage compensation equalizes X-chromosome gene expression between C. elegans XO males and XX hermaphrodites through a dosage compensation complex (DCC) that resembles condensin. The DCC binds to both X chromosomes of hermaphrodites to repress transcription by half. Here we ...
ORGANISM(S): Caenorhabditis elegans 
2013-08-31 | E-GEOD-48413 | biostudies-arrayexpress
GenomicsCaenorhabditis briggsae SDC-2 and DPY-27 ChIP-seq
ChIP-seq for the SDC-2 and DPY-27 subunits of the dosage compensation complex in C. briggsae
ORGANISM(S): Caenorhabditis briggsae 
2023-02-15 | GSE214714 | GEO
TranscriptomicsA condensin-like dosage compensation complex acts at a distance to control expression throughout the genome
This SuperSeries is composed of the following subset Series: GSE14649: DCC binding and function (Expression Analysis) GSE14650: DCC binding and function (ChIP-chip: SDC-3, MIX-1, DPY-27, Mock) GSE14651: DCC binding and function (ChIP-chip: DPY-27) GSE14652: DCC binding and function (ChIP-chip: SDC-2...
ORGANISM(S): Caenorhabditis elegans 
2010-05-22 | E-GEOD-14640 | biostudies-arrayexpress
GenomicsSDC-induced mouse gut flora
SDC-induced mouse gut flora Raw sequence reads
PRJNA1151967 | ENA
TranscriptomicsTranscriptional remodeling in response to transfer upon carbon-limited or metformin-supplemented media in S. cerevisiae and its effect on chronological life span
The genome-wide transcriptional response of S. cerevisiae cells upon transfer to carbon-limited or metformin supplemented media is investigated. DHO strain (BY4742 background) was cultivated batch-wise in SDC media at 30C and 180 rpm up to mid-exponential phase (OD600 ~ 0.6). The cells of the main c...
ORGANISM(S): Saccharomyces cerevisiae 
2015-04-30 | E-MTAB-3001 | biostudies-arrayexpress
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