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TranscriptomicsTranscription profiling of Enterococcus faecalis V583 treated with SDS and bovine bile
The effects of bovine bile and SDS on transcriptional events were studied by means of genome wide microarrays in Enterococcus faecalis V583. Transcriptional profiles were obtained through time series experiments over periods of 120min for cells treated with bile and the combination of SDS and bile,...
ORGANISM(S): Enterococcus faecalis 
2007-08-01 | E-TABM-242 | biostudies-arrayexpress
ProteomicsPhos-tag SDS-PAGE followed by LC-MS/MS analysis of in vitro phosphorylated Nab2, Foxk1, and HURP
Purified GST-fused Nab2, Foxk1, and HURP were incubated with ATP in the presence or absence of His-tagged active ERK in vitro, separated by Phos-tag SDS-PAGE, and visualized by CBB staining. The most shifted regions of protein bands on the Phos-tag-containing gels were excised, digested with trypsin...
ORGANISM(S): Mus Musculus (mouse) 
2022-03-03 | PXD028837 | JPOST Repository
TranscriptomicsGlucosylceramide fed mice skin before SDS treatment (0d), after SDS treatment (2d)
Dietary glucosylceramide (GC) improves skin barrier function. To elucidate the molecular mechanisms involved, we used a microarray system to analyze mRNA expression in SDS-treated dorsal skin of hairless mouse. Transepidermal water loss of mouse skin was increased by SDS treatment and the increase w...
ORGANISM(S): Mus musculus 
2012-03-31 | E-GEOD-28086 | biostudies-arrayexpress
Proteomicsa novel SDS-based sample preparation for proteomics
Sodium dodecyl sulfate (SDS) is widely used in sample preparation for proteomic research. However, SDS is incompatible with liquid chromatography and electrospray ionization (ESI). SDS depletion is therefore required ahead of liquid chromatography coupled with mass spectrometry (LC-MS) analysis. Mos...
ORGANISM(S): Homo Sapiens Mus Musculus 
2021-03-02 | PXD023557 |
GenomicsShwachman Diamond syndrome SDS Exome sequencing
Shwachman-Diamond syndrome (SDS) is a rare autosomal recessive disorder characterized by exocrine pancreatic insufficiency, bone marrow dysfunction, leukemia predisposition, and skeletal abnormalities. We aim to characterise the structural effects of SDS in patients with this disorder by exome seque...
EGAS00001000264 | EGA
TranscriptomicsTranscription profiling of rice plants under the Sds (severe drought in soil) condition in shoots
In this series of experiments, we wanted to study the transcriptional responses of plants to different levels of water limitation. For mild drought stress, we controlled water potential (a scientific concept for dryness of soil) by using an automated watering system. This system adds water to soil b...
ORGANISM(S): Oryza sativa 
2016-12-26 | E-MTAB-4138 | biostudies-arrayexpress
no omics definedTranscription profiling of Mycobacterium tuberculosis wild type and sigE mutant strains after exposure to stress induced by SDS
In previously published work, we identified three Mycobacterium tuberculosis sigma (s) factor genes responding to heat shock (sigB, sigE and sigH ). Two of them (sigB and sigE ) also responded to SDS exposure. As these responses to stress suggested that the s factors encoded by these genes could be ...
ORGANISM(S): Mycobacterium tuberculosis 
2007-09-12 | E-TABM-313 | biostudies-arrayexpress
TranscriptomicsDistribution of segmental duplications in the context of higher order chromatin organisation of human chromosome 7
Background Segmental duplications (SDs) are not evenly distributed along chromosomes. The reasons for this biased susceptibility to SD insertion are poorly understood. Accumulation of SDs is associated with increased genomic instability, which can lead to structural variants and genomic disorders su...
ORGANISM(S): Homo sapiens 
2014-07-01 | E-GEOD-41356 | biostudies-arrayexpress
TranscriptomicsGlucosylceramide fed mice skin before SDS treatment (0d), after SDS treatment (2d)
Dietary glucosylceramide (GC) improves skin barrier function. To elucidate the molecular mechanisms involved, we used a microarray system to analyze mRNA expression in SDS-treated dorsal skin of hairless mouse. Transepidermal water loss of mouse skin was increased by SDS treatment and the increase w...
ORGANISM(S): Mus musculus 
2012-04-01 | GSE28086 | GEO
TranscriptomicsTranscription profiling of rice plants under the Sds (severe drought in soil) condition in shoot basal region
In this series of experiments, we wanted to study the transcriptional responses of plants to different levels of water limitation. For mild drought stress, we controlled water potential (a scientific concept for dryness of soil) by using an automated watering system. This system adds water to soil b...
ORGANISM(S): Oryza sativa 
2016-12-26 | E-MTAB-4141 | biostudies-arrayexpress
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