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TranscriptomicsReconstruction of signaling networks regulating fungal morphogenesis by transcriptomics
Reconstruction of signaling networks regulating fungal morphogenesis by the expression profiling of wild-type and the temperature sensitive morphological ramosa-1 mutant. Aspergillus niger wildtype versus Ramosa mutant for 1h at 37 under controlled growth condition in 5L bioreactor
ORGANISM(S): Aspergillus niger 
2010-05-05 | E-GEOD-17641 | biostudies-arrayexpress
GenomicsDianthus ancestral sequence reconstruction
Ancestral sequence reconstruction in Dianthus
PRJEB54098 | ENA
TranscriptomicsWhole-genome Haplotype Reconstruction using Proximity-ligation and Shotgun Sequencing
Rapid advances in high-throughput DNA sequencing technologies are accelerating the pace of research into personalized medicine. While methods for variant discovery and genotyping from whole genome sequencing (WGS) datasets have been well established, linking variants together into a single haplotype...
ORGANISM(S): Homo sapiens 
2013-11-03 | E-GEOD-48592 | biostudies-arrayexpress
Transcriptomicscis sequence effects on gene expression
Sequence and transcriptional variability within and between individuals are typically studied independently. The joint analysis of sequence and gene expression variation provides insight into biological mechanisms that underlie gene regulation and function. We investigated the role of sequence varia...
ORGANISM(S): Homo sapiens 
2008-04-09 | E-GEOD-8394 | biostudies-arrayexpress
TranscriptomicsGenome-scale reconstruction of the sigma factor network in E. coli
We report the application of single-molecule-based sequencing technology for high-throughput profiling of transcription start sites for Escherichia coli under different conditions. By obtaining sequence from 5' RACE (rapid amplification of cDNA ends) followed by deep sequencing, we generated genome-...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2014-02-05 | E-GEOD-46737 | biostudies-arrayexpress
TranscriptomicsRNA sequencing of mouse DCs
RNA-Seq data were targeted for de novo assembly and reconstruction of full-length mouse transcripts. Sequencing of RNA taken from unstimulated DCs.
ORGANISM(S): Mus musculus 
2011-05-12 | E-GEOD-29209 | biostudies-arrayexpress
ProteomicsProtein ID of Escherichia phage EcS1
Nucleotide sequence accession number The nucleotide sequence of Escherichia virus EcS1 was deposited in the DDBJ database under accession number LC371242.
ORGANISM(S): Cellular Organisms 
2019-10-23 | PXD011454 | JPOST Repository
TranscriptomicsCharacterization of the Bacterial Diversity of Drinking Water From 3 Parisian Treatment Plants Using Genomic Approaches
We characterized the bacterial diversity of chlorinated drinking water from three surface water treatment plants supplying the city of Paris, France. For this purpose, we used serial analysis of V6 ribosomal sequence tag (SARST-V6) to produce concatemers of PCR-amplified ribosomal sequence tags (RST...
ORGANISM(S): Bacteria 
2009-01-07 | E-GEOD-14318 | biostudies-arrayexpress
TranscriptomicsRNA-Seq Based Reconstruction of the Phylogenetic Tree of the Genus Flaveria (Asteraceae)
The genus Flaveria has been extensively used as a model to study the evolution of C4 photosynthesis as it contains both C3 and C4 species as well as a number of species that exhibit intermediate types of photosynthesis. The current phylogenetic tree of the Flaveria genus contains 21 of the 23 known ...
ORGANISM(S): Flaveria cronquistii 
2015-01-08 | E-GEOD-54339 | biostudies-arrayexpress
UnknownAlignment Modulates Ancestral Sequence Reconstruction Accuracy.
Not available
S-EPMC5995191 | biostudies-literature
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