Sevs - OmicsDI

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Unknown (918)
Genomics (183)
Proteomics (140)
Transcriptomics (59)
Metabolomics (3)
Other (2)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (111)
Andropogon gerardi (111)
Bacteria (111)
Bartonella quintana JK 31 (111)
Canis lupus familiaris (111)
Cnidaria (111)
Ectopseudomonas oleovorans CECT 5344 (111)
Ensifer adhaerens (111)
Halictus scabiosae (111)
Human immunodeficiency virus 1 (111)
Mesocricetus auratus (111)
Methylohalobius crimeensis 10Ki (111)
Miscanthus x giganteus (111)
Mus musculus (111)
Panicum virgatum (111)
Pseudomonas aeruginosa SJTD-1 (111)
Rabies virus Nishigahara RCEH (111)
Rattus norvegicus (111)
Rattus rattus (111)
Rhodococcus jostii RHA1 (111)
Rhodopseudomonas palustris (111)
Schizosaccharomyces pombe 927 (111)
Sorghastrum nutans (111)
Homo sapiens (70)
Mus musculus (45)
Rattus norvegicus (8)
synthetic construct (4)
Equus caballus (1)
Bos taurus (1)
Sus scrofa domesticus (1)

Organisms

Homo sapiens (71)
Mus musculus (34)
Rattus norvegicus (4)
Equus caballus (1)
Pinctada fucata (1)
Toxoplasma gondii (1)
Bos taurus (1)

Repository

ENA (139)
pride (111)
geo (98)
iProX (15)
MassIVE (9)
biostudies-arrayexpress (7)
jPOST (5)
MetaboLights (2)
GNPS (1)

Tissue

Cell culture (24)
Epithelial cell (15)
Blood plasma (11)
Extracellular vesicle (7)
Permanent cell line cell (6)
Blood serum (5)
Colon (5)
Brain (4)
T cell (4)
Cell suspension culture (3)
Embryonic stem cell (3)
Fibroblast (3)
Lymph node (3)
Pancreas (3)
Breast (2)
Cerebrospinal fluid (2)
Cytotoxic T-lymphocyte (2)
Kidney (2)
Liver (2)
Semen (2)
Stem cell (2)
Adipose tissue (1)
Amniotic fluid (1)
Bone (1)
Bone marrow (1)
Brain microvascular endothelial cell (1)
Breast cell line (1)
Breast epithelium (1)
Culture condition: dark grown cells (1)
HeLa cell (1)

Disease

Breast cancer (8)
Disease free (5)
Colon cancer (4)
Brain glioblastoma multiforme (3)
Human immunodeficiency virus infectious disease (3)
Brain cancer (2)
Colorectal cancer (2)
Glioblastoma (2)
Melanoma (2)
Pre-eclampsia (2)
Type 2 diabetes mellitus (2)
Antenatal onset (1)
Atopic dermatitis (1)
Breast adenocarcinoma (1)
Cataract (1)
Glaucoma (1)
Head and neck squamous cell carcinoma (1)
Human cytomegalovirus infection (1)
Hydronephrosis (1)
Hypersensitivity reaction type I disease (1)
Liver cirrhosis (1)
Lymphoma (1)
Male infertility (1)
Malignant neoplasm of ovary (1)
Non-small cell lung carcinoma (1)
Obesity (1)
Oral cavity (1)
Osteoporosis (1)
Ovary epithelial cancer (1)
Sjogren's Syndrome (1)

Technology Type

Mass Spectrometry (111)
Shotgun proteomics (57)
Bottom-up proteomics (32)
Data-dependent acquisition (18)
Data-independent acquisition (12)
Gel-based experiment (8)
Affinity purification coupled with mass spectrometry proteomics (3)
SWATH MS (3)
Mass spectrometry (2)
MSE (2)
Top-down proteomics (2)
DiaPASEF (1)

Instrument Platform

Illumina HiSeq 2500 (5)
Illumina TruSeq Small RNA Sample kit (2)
TRIzol reagent (2)
Q Exactive (2)
Orbitrap Q Extractive Plus (2)
Q Exactive HF-X (2)
BD Vacutainer, 367814; ExoQuick (1)
NextSeq 500 (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
QE-HF in DIA mode in the LC-MS/MS (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2025 (64)
2024 (42)
2026 (38)
2023 (33)
2022 (25)
2021 (23)
2020 (7)
2019 (4)
2018 (2)
2017 (1)

CHEBI ID

CHEBI:47979 (1)
CHEBI:189710 (1)
CHEBI:47878 (1)
CHEBI:28013 (1)
CHEBI:191640 (1)
CHEBI:17665 (1)
CHEBI:84634 (1)
CHEBI:21949 (1)
CHEBI:24344 (1)
CHEBI:5417 (1)
CHEBI:18009 (1)
CHEBI:37455 (1)
CHEBI:59640 (1)
CHEBI:15682 (1)
CHEBI:15859 (1)
CHEBI:16450 (1)
CHEBI:15713 (1)
CHEBI:16264 (1)
CHEBI:17659 (1)
CHEBI:17822 (1)
CHEBI:15721 (1)
CHEBI:15414 (1)
CHEBI:16680 (1)
CHEBI:26271 (1)
CHEBI:15846 (1)
CHEBI:25094 (1)
CHEBI:17202 (1)
CHEBI:17858 (1)
CHEBI:16856 (1)
CHEBI:15978 (1)

Metabolite Name

Acetyl-L-carnitine (2.0) (1)
N-Ac-Muramate (1)
N-Ac-Glucosamine-6P (1)
N-Ac-Glucosamine (1)
OphthalmicAcid (1)
Butyryl-L-carnitine (4.0) (1)
Hexanoyl-L-carnitine (6.0) (1)
S-Adenosyl-Homocysteine (1)
S-Adenosyl-Methionine (1)
UDP-N-Ac-Glucosamine (1)
Myristoyl-L-carnitine (14.0) (1)
AcetylCoA (1)
Palmitoyl-L-carnitine (16.0) (1)
Stearoyl-L-carnitine (18.0) (1)
GLY (1)
B-ALA (1)
Glyceraldehyde3P (1)
Dihydroxyacetone3P (1)
2P-glycerate (1)
ASP (1)
Erythrose4P (1)
MET (1)
Ribulose5P (1)
A-Ketoglutarate (1)
N-Carbamoyl-aspartate (1)
HexP (1)
Fructose16bisP (1)
N-Acetylglutamate (1)
Sedoheptulose7P (1)
Oleoyl-L-carnitine (18.1) (1)

First Public Date

2025 (46)
2024 (30)
2026 (23)
2023 (13)
2022 (9)
2021 (8)
2020 (4)
2019 (4)
2018 (1)
2017 (1)

Classification

protozoa (1)

Study type

RNA-seq of coding RNA (4)
MicroRNA profiling by high throughput sequencing (1)
Transcription profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (196)
2023 (170)
2022 (161)
2024 (149)
2021 (114)
2020 (63)
2026 (31)
2019 (26)
2018 (7)
2017 (5)
2016 (2)
1999 (1)

Lab affiliation

Department of Chemistry and Biomolecular Sciences, University of Ottawa, Canada (4)
Head of the Curie Institute Mass Spectrometry Platform (4)
Baker Heart and Diabetes Institute (2)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (2)
Cellular Neurophysiology, Center for Integrative Physiology and Molecular Medicine (CIPMM), Saarland University, 66421 Homburg, Germany (2)
Division of Gastroenterology and Hepatology; Shanghai Institute of Digestive Disease; NHC Key Laboratory of Digestive Diseases; State Key Laboratory for Oncogenes and Related Genes; Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200001, China (2)
Head of Cell Signaling and Clinical Proteomics Group. IIS Biobizkaia. Ikerbasque. (2)
Laboratory of Mass Spectrometry, Core Facility Laboratories, Intercollegiate Faculty of Biotechnology UG&MUG, University of Gdansk, Gdansk, Poland (2)
Shanghai Jiao Tong University Affiliated Sixth People's Hospital (2)
Vanderbilt University (2)
1)Department of Pediatrics III, University Hospital Essen, Hufelandstrasse 55, 45147 Essen, Germany. 2)Department of General, Visceral, Vascular and Transplant Surgery, Medical Faculty, University Hospital Essen, Hufelandstrasse 55, 45147 Essen, Germany. (1)
1State Key Laboratory of Digital Medical Engineering, Department of Otolaryngology Head and Neck Surgery, Zhongda Hospital, School of Life Sciences and Technology, School of Medicine, Advanced Institute for Life and Health, Jiangsu Province High-Tech Key Laboratory for Bio-Medical Research, Southeast University, Nanjing 210096, China.2 Co-Innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China. (1)
Associate Professor (1)
Baker Heart & Diabetes Inst. (1)
Baker Heart & Diabetes Institute (1)
Bavarian Center for Biomolecular Mass Spectrometry at Klinikum rechts der Isar (BayBioMS@MRI), TUM School of Medicine and Health, Technical University of Munich (TUM), 81675 München, Germany (1)
Bioeconomy Science Institute, AgResearch Ltd., Lincoln 7674, New Zealand. (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands; Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands; and Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore. (1)
Brain Tumor Translational Targets B067 German Cancer Research Center (DKFZ) Im Neuenheimer Feld 580 69120 Heidelberg Germany Phone: +49 6221 42-4635 (1)
Cell Culture Technology, Technical Faculty, Bielefeld University, Germany (1)
Cellular & Molecular Metabolism Laboratory, Drug Discovery Biology, Monash Institute of Pharmaceutical Sciences, Monash University. (1)
Centre for Cancer and Inflammation Research, School of Chinese Medicine, Hong Kong Baptist University (1)
Centre for Cancer and Inflammation Research, School of Chinese Medicine, Hong Kong Baptist University. (1)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, Majadahonda, E-28220 Madrid, Spain (1)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, Majadahonda, Madrid, Spain (1)
Chronic Disease Programme, UFIEC, Instituto de Salud Carlos III, 28220 Majadahonda, Madrid, Spain (1)
Computational and Experimental Biology Group NOVA MEDICAL SCHOOL / FACULDADE DE CIÊNCIAS MÉDICAS UNIVERSIDADE NOVA DE LISBOA Rua Câmara Pestana, 6-6A | 1150-082 Lisboa Portugal (1)
Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Paraná, PR, Brasil. Instituto Oswaldo Cruz, Rio de Janeiro, Brasil (1)
Department of Biochemistry and Chemistry, La Trobe Institute for Molecular Science (LIMS), La Trobe University, Melbourne, Victoria 3086, Australia (1)
Department of Biophysics, All India Institute of Medical Sciences, New Delhi, Delhi, India (110029) (1)

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Unbiased miRNA screening analysis on myo-sEVs derived from Nor or HG/HL

The current study aims were to determine the differential expression of Myo-sEVs derived from normal or HG/HL.Mouse primary myocardial cells were isolated and cultured in normal and HG/HL culture medium. Myo-sEVs were separated by ultracentrifugation.Differential myo-sEVs-miRNA expression obtained ...

ORGANISM(S): Mus musculus

2024-02-07 | E-MTAB-13736 | biostudies-arrayexpress

RNA-Seq for primary rat Kupffer cells and monocytes treated with hepatic stellate cell-derived small extracellular vesicles

Aim: To find out the effects of small extracellular vesicles (sEVs) from short-term activated and long-term activated hepatic stellate cells (HSCs) on Kupffer cells (KCs) and bone marrow-derived monocytes (MOs). Methods: For the isolation of HSC-derived sEVs, culture media (CMs) from Day 0 to Day 3 ...

ORGANISM(S): Rattus norvegicus

2024-08-29 | E-MTAB-12754 | biostudies-arrayexpress

Small RNA-Seq for primary rat hepatic stellate cells and hepatic stellate cell-derived small extracellular vesicles

Aims: To obtain small non-coding RNA expression profiles of short-term activated and long-term activated hepatic stellate cells (HSCs). To obtain small non-coding RNA expression profiles of small extracellular vesicles (sEVs) from short-term activated and long-term activated HSCs. Methods: Primar...

ORGANISM(S): Rattus norvegicus

2024-08-29 | E-MTAB-12764 | biostudies-arrayexpress

Whole transcriptome analysis of endothelial cells (HUVECs) after treatment with plasma-sEVs from polytrauma patients

PRJNA722438 | ENA

Effect of insulin on miRNA abundance in 3T3-L1 adipocytes and their secreted sEVs.

PRJNA1122217 | ENA

ESC-sEVs rejuvenate aging hippocampal NSCs by transferring SMADs to regulate the MYT1-Egln3-Sirt1 axis

PRJNA663605 | ENA

Proteomic, phosphoproteomic and N-glycoproteomic analysis of small extracellular vesicles (sEVs) from C2C12 myoblasts

We conducted a comprehensive and integrated proteomic，phosphoproteomic, N-glycoproteomic analysis of the cargos in small extracellular vesicles (sEVs)-derived from C2C12 myoblasts.

ORGANISM(S): Mus Musculus

2023-12-20 | PXD047974 |

Pinctada fucata

Environmental Exosomes/sEVs

PRJDB37606 | ENA

RNASeq of HEK293 suspension cell-derived sEVs treated with a 72 h hyperthermic shift to 40°C versus untreated (37°C) controls

Experiment aimed at understanding the compositional changes of small extracellular vesicles (sEVs) derived from cells grown under hyperthermic conditions. Human embryonic kidney (HEK293) cells were cultured 48 h under normal conditions (37°C/140 rpm/5% CO2) before being subjected to a 72 h, 40°C tem...

ORGANISM(S): Homo sapiens

2023-08-18 | E-MTAB-13285 | biostudies-arrayexpress

iPSCs derived sEVs ameliorate NK cell senescence by targeting CISH-STAT3.

Not available

S-EPMC12613503 | biostudies-literature

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